View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_66 (Length: 404)
Name: NF10145A_low_66
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_66 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 2 - 400
Target Start/End: Complemental strand, 36936246 - 36935841
Alignment:
| Q |
2 |
tcgagtttggtgttattgcattcaatttgtcgaaaaaccctaaatgtgtttgaccttttggaattgcatcctgaggacattgctaatgtgagatgtctcc |
101 |
Q |
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| T |
36936246 |
tcgagtttgttgttattgtgttcaatttgtcgaaaaaccctaaatatgtttgaccttttggaattgcatcctgaggacattgctaatgtgagatgtctcc |
36936147 |
T |
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| Q |
102 |
agcctcgatctcttctacaaccatctaatggtcactttcgagacttcctgtagtcaatctgagcatacaaaaaccaaagaaaataattcataaccgagca |
201 |
Q |
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| T |
36936146 |
aacctcgatctcttctaaaaccatctaatggtcactttcgagactacctgtagtcaatctgagcatacaaaaaccaaagaaa-taattcataaccgagca |
36936048 |
T |
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| Q |
202 |
aga--------ttaaacaccatgaataggagttgtctatatttatgaataacttcgccatgatttatacataggaagggatgtggtatatttgtgcccaa |
293 |
Q |
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| T |
36936047 |
agaatgcaagattaaacaccatgaataggagtagtctatatttatgaataacttcgccatgatttatacataggaagggatgtggtatatttgtgcccaa |
36935948 |
T |
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| Q |
294 |
aaaacatcataaaatggttatgcatcgagaaacgcagaaattaaacaaactagtaaataacattattatacatcatgtctaaaactggcattatccataa |
393 |
Q |
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| T |
36935947 |
aaaacatcataaaatggttatgcatcgagaaacgcagaaattaaacaaactagtaaataacattattatacatcatgtctaaaactggcattatccataa |
36935848 |
T |
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| Q |
394 |
attaata |
400 |
Q |
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| T |
36935847 |
attaata |
36935841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 36957044 - 36956993
Alignment:
| Q |
50 |
tttgaccttttggaattgcatcctgaggacattgctaatgtgagatgtctcca |
102 |
Q |
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| T |
36957044 |
tttgaccttctgaaattgca-cctgaggatattgctaatgcgagatgtctcca |
36956993 |
T |
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