View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_660 (Length: 225)
Name: NF10145A_low_660
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_660 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 16161246 - 16161022
Alignment:
| Q |
1 |
caacaatgtgaattataaacaaatggacaaactaataagaggatagtagtttaaatatggacctctaagagataaatggcgttgcataattttacttcga |
100 |
Q |
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| T |
16161246 |
caacaatgtgaattataaacaaatggacaaactaataagaggatagtagtttaaatatggacctctaagagataaatggcgttgcataattttacttcga |
16161147 |
T |
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| Q |
101 |
tgaggttaacaaaaggaaagcaataaagaagatagagccacaaaaatataaatgtagatgtaaataaaaacactgctaaattaagcatacagtggagaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
16161146 |
tgaggttaacaaaaggaaagcaataaagaagataaagccacaaaaatataaatgtagatgtaaataaaaacactgctaaattaagcatacggcggagaat |
16161047 |
T |
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| Q |
201 |
aaggtggatttattccaaataacag |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
16161046 |
aaggtggatttattccaaataacag |
16161022 |
T |
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