View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10145A_low_663 (Length: 224)
Name: NF10145A_low_663
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_663 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] chr5 (2 HSPs) |
| |
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| [»] chr4 (4 HSPs) |
| |
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| [»] chr3 (3 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 9442417 - 9442640
Alignment:
| Q |
1 |
atcttgctcctccctgagatatttctggtgactcccacacatcagaatgtatcaagtctagtatgtgtttgcttctagtagttactctagcaaacttcaa |
100 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9442417 |
atcttgctcctcccagagataattctggtgactcccacacatcagaatgtatcaagtctagtatgtgtttgcttctagtagttactctagcaaacttcaa |
9442516 |
T |
|
| Q |
101 |
tctatgttgcttgcttatcacacagtgctcacagaatggtaaatttactgtcttgagcccgtgaaggagattgcgttccgcaaggacttttaagccacgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
9442517 |
tctatgttgcttgcttatcacacagtgctcacagaatggtaaatttactgtcttgagcccgtgaaggagattgcgttccacaaggactttcaagccacgt |
9442616 |
T |
|
| Q |
201 |
tctgacatatggcctagtctttga |
224 |
Q |
| |
|
|| ||||||||||||||||||||| |
|
|
| T |
9442617 |
tcagacatatggcctagtctttga |
9442640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 4 - 218
Target Start/End: Original strand, 24596816 - 24597030
Alignment:
| Q |
4 |
ttgctcctccctgagatatttctggtgactcccacacatcagaatgtatcaagtctagtatgtgtttgcttctagtagttactctagcaaacttcaatct |
103 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| | |||||||||||| |
|
|
| T |
24596816 |
ttgctcctcccatggatatttgtggtgactcccacacatcagaatgtatcaagtcaagtatgtatttgcttctagtagttactctggaaaacttcaatct |
24596915 |
T |
|
| Q |
104 |
atgttgcttgcttatcacacagtgctcacagaatggtaaatttactgtcttgagcccgtgaaggagattgcgttccgcaaggacttttaagccacgttct |
203 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| | ||||| |||||||||||||| | || ||||| ||||| |||| |||| || |||||||| |
|
|
| T |
24596916 |
atgttgcttgcttgtcacacagtgctcacagaaagacaaattcactgtcttgagcccaggtagaagattttgttcctcaagagctttcaaaccacgttcc |
24597015 |
T |
|
| Q |
204 |
gacatatggcctagt |
218 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
24597016 |
gatatatggcctagt |
24597030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 27877034 - 27877257
Alignment:
| Q |
1 |
atcttgctcctccctgagatatttctggtgactcccacacatcagaatgtatcaagtctagtatgtgtttgcttctagtagttactctagcaaacttcaa |
100 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27877034 |
atcttgctcctcccagagataattctggtgactcccacacatcagaatgtatcaagtctagtatgtgtttgcttctagtagttactctagcaaacttcaa |
27877133 |
T |
|
| Q |
101 |
tctatgttgcttgcttatcacacagtgctcacagaatggtaaatttactgtcttgagcccgtgaaggagattgcgttccgcaaggacttttaagccacgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
27877134 |
tctatgttgcttgcttatcacacagtgctcacagaatggtaaatttactgtcttgagcccgtgaaggagattgcgttccacaaggactttcaagccacgt |
27877233 |
T |
|
| Q |
201 |
tctgacatatggcctagtctttga |
224 |
Q |
| |
|
|| ||||||||||||||||||||| |
|
|
| T |
27877234 |
tcagacatatggcctagtctttga |
27877257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 41720402 - 41720179
Alignment:
| Q |
1 |
atcttgctcctccctgagatatttctggtgactcccacacatcagaatgtatcaagtctagtatgtgtttgcttctagtagttactctagcaaacttcaa |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41720402 |
atcttgctcctcctagagatatttctggtgactcccacacatcagaatgtatcaagtctagtatgtgtttgcttctagtagttactctagcaaacttcaa |
41720303 |
T |
|
| Q |
101 |
tctatgttgcttgcttatcacacagtgctcacagaatggtaaatttactgtcttgagcccgtgaaggagattgcgttccgcaaggacttttaagccacgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41720302 |
tctatgttgcttgcttatcacacagtgctcacaaaatggtaaatttactgccttgagcccgtgaaggagattgcgttccgcaaggactttcaagccacgt |
41720203 |
T |
|
| Q |
201 |
tctgacatatggcctagtctttga |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
41720202 |
tctgacatatggcctagtctttga |
41720179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 34354002 - 34353779
Alignment:
| Q |
1 |
atcttgctcctccctgagatatttctggtgactcccacacatcagaatgtatcaagtctagtatgtgtttgcttctagtagttactctagcaaacttcaa |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34354002 |
atcttgctcctcccagagatatttctggtgactcccacacatcagaatgtatcaagtctagtatgtgtttgcttttagtagttactctagcaaacttcaa |
34353903 |
T |
|
| Q |
101 |
tctatgttgcttgcttatcacacagtgctcacagaatggtaaatttactgtcttgagcccgtgaaggagattgcgttccgcaaggacttttaagccacgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
34353902 |
tctatgttgcttgcttatcacacagtgctcacaaaatggtaaatttactgccttgagcccgtgaaggagattgcgttcagcaaggactttcaagccacgt |
34353803 |
T |
|
| Q |
201 |
tctgacatatggcctagtctttga |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
34353802 |
tctgacatatggcctagtctttga |
34353779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 30948508 - 30948731
Alignment:
| Q |
1 |
atcttgctcctccctgagatatttctggtgactcccacacatcagaatgtatcaagtctagtatgtgtttgcttctagtagttactctagcaaacttcaa |
100 |
Q |
| |
|
|||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30948508 |
atcttgctcctcccagagataattttggtgactcccacacatcagaatgtatcaagtctagtatgtgtttgcttctagtagttactctagcaaacttcaa |
30948607 |
T |
|
| Q |
101 |
tctatgttgcttgcttatcacacagtgctcacagaatggtaaatttactgtcttgagcccgtgaaggagattgcgttccgcaaggacttttaagccacgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
30948608 |
tctatgttgcttgcttatcacacagtgctcacagaatggtaaatttactgtcttgagcccgtgaaggagattgcgttccacaaggactttcaagccacgt |
30948707 |
T |
|
| Q |
201 |
tctgacatatggcctagtctttga |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
30948708 |
tctgacatatggcctagtctttga |
30948731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 42267895 - 42267672
Alignment:
| Q |
1 |
atcttgctcctccctgagatatttctggtgactcccacacatcagaatgtatcaagtctagtatgtgtttgcttctagtagttactctagcaaacttcaa |
100 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42267895 |
atcttgctcctcccagagataattctggtgactcccacacatcagaatgtatcaagtctagtatgtgtttgcttctagtagttactctagcaaacttcaa |
42267796 |
T |
|
| Q |
101 |
tctatgttgcttgcttatcacacagtgctcacagaatggtaaatttactgtcttgagcccgtgaaggagattgcgttccgcaaggacttttaagccacgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
42267795 |
tctatgttgcttgcttatcacacagtgctcacagaatggtaaatttactgtcttgagcccgtgaaggagattgcgttccacaaggactttcaagccacgt |
42267696 |
T |
|
| Q |
201 |
tctgacatatggcctagtctttga |
224 |
Q |
| |
|
|| ||||||||||||||||||||| |
|
|
| T |
42267695 |
tcagacatatggcctagtctttga |
42267672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 48700146 - 48700369
Alignment:
| Q |
1 |
atcttgctcctccctgagatatttctggtgactcccacacatcagaatgtatcaagtctagtatgtgtttgcttctagtagttactctagcaaacttcaa |
100 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48700146 |
atcttgctcctcccagagataattctggtgactcccacacatcagaatgtatcaagtctagtatgtgtttgcttctagtagttactctagcaaacttcaa |
48700245 |
T |
|
| Q |
101 |
tctatgttgcttgcttatcacacagtgctcacagaatggtaaatttactgtcttgagcccgtgaaggagattgcgttccgcaaggacttttaagccacgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
48700246 |
tctatgttgcttgcttatcacacagtgctcacagaatggtaaatttactgtcttgagcccgtgaaggagattgcgttccacaaggactttcaagccacgt |
48700345 |
T |
|
| Q |
201 |
tctgacatatggcctagtctttga |
224 |
Q |
| |
|
|| ||||||||||||||||||||| |
|
|
| T |
48700346 |
tcagacatatggcctagtctttga |
48700369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 4 - 218
Target Start/End: Complemental strand, 2000874 - 2000660
Alignment:
| Q |
4 |
ttgctcctccctgagatatttctggtgactcccacacatcagaatgtatcaagtctagtatgtgtttgcttctagtagttactctagcaaacttcaatct |
103 |
Q |
| |
|
||||||||||| ||||||| ||| ||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
2000874 |
ttgctcctcccatggatatttgtggcgactcccacacatcagaatgtattaagtcaagtatgtatttgcttctagtagttactatagaaaacttcaatct |
2000775 |
T |
|
| Q |
104 |
atgttgcttgcttatcacacagtgctcacagaatggtaaatttactgtcttgagcccgtgaaggagattgcgttccgcaaggacttttaagccacgttct |
203 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| | ||||| | |||||||||||| | || ||||| |||||||||| |||| || ||| |||| |
|
|
| T |
2000774 |
atgttgcttgcttgtcacacagtgctcacagaaagacaaattcattgtcttgagcccaggtagaagattttgttccgcaagagctttcaaaccatgttcc |
2000675 |
T |
|
| Q |
204 |
gacatatggcctagt |
218 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
2000674 |
gacatatggcctagt |
2000660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 5821600 - 5821823
Alignment:
| Q |
1 |
atcttgctcctccctgagatatttctggtgactcccacacatcagaatgtatcaagtctagtatgtgtttgcttctagtagttactctagcaaacttcaa |
100 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5821600 |
atcttgctcctcccagagataattctggtgactcccacacatcagaatgtatcaagtctagtatgtgtttgcttctagtagttactctagcaaacttcaa |
5821699 |
T |
|
| Q |
101 |
tctatgttgcttgcttatcacacagtgctcacagaatggtaaatttactgtcttgagcccgtgaaggagattgcgttccgcaaggacttttaagccacgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
5821700 |
tctatgttgcttgcttatcacacagtgctcacagaatggtaaatttactgtcttgagcccgtgaaggagattgcgttccacaaggactttcaagccacgt |
5821799 |
T |
|
| Q |
201 |
tctgacatatggcctagtctttga |
224 |
Q |
| |
|
|| ||||||||||||||||||||| |
|
|
| T |
5821800 |
tcagacatatggcctagtctttga |
5821823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 2815588 - 2815811
Alignment:
| Q |
1 |
atcttgctcctccctgagatatttctggtgactcccacacatcagaatgtatcaagtctagtatgtgtttgcttctagtagttactctagcaaacttcaa |
100 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2815588 |
atcttgctcctcccagagataattctggtgactcccacacatcagaatgtatcaagtctagtatgtgtttgcttctagtagttactctagcaaacttcaa |
2815687 |
T |
|
| Q |
101 |
tctatgttgcttgcttatcacacagtgctcacagaatggtaaatttactgtcttgagcccgtgaaggagattgcgttccgcaaggacttttaagccacgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2815688 |
tctatgttgcttgcttatcacacagtgctcacaaaatggtaaatttactgaattgagcccgtgaaggagattgcgttccgcaaggactttcaagccacgt |
2815787 |
T |
|
| Q |
201 |
tctgacatatggcctagtctttga |
224 |
Q |
| |
|
| |||||||||||||||||||||| |
|
|
| T |
2815788 |
tatgacatatggcctagtctttga |
2815811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 4 - 218
Target Start/End: Complemental strand, 42586940 - 42586726
Alignment:
| Q |
4 |
ttgctcctccctgagatatttctggtgactcccacacatcagaatgtatcaagtctagtatgtgtttgcttctagtagttactctagcaaacttcaatct |
103 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| | |||||||||||| |
|
|
| T |
42586940 |
ttgctcctcccatggatatttgtggtgactcccacacatcagaatgtatcaagtcaagtatgtatttgcttctagtagttactctggaaaacttcaatct |
42586841 |
T |
|
| Q |
104 |
atgttgcttgcttatcacacagtgctcacagaatggtaaatttactgtcttgagcccgtgaaggagattgcgttccgcaaggacttttaagccacgttct |
203 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| | ||||| | |||||||||||| | || ||||| |||||||||| |||| || |||||||| |
|
|
| T |
42586840 |
atgttgcttgcttgtcacacagtgctcacagaaagacaaattcattgtcttgagcccaggtagaagattttgttccgcaagagctttcaaaccacgttcc |
42586741 |
T |
|
| Q |
204 |
gacatatggcctagt |
218 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
42586740 |
gacatatggcctagt |
42586726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 827471 - 827248
Alignment:
| Q |
1 |
atcttgctcctccctgagatatttctggtgactcccacacatcagaatgtatcaagtctagtatgtgtttgcttctagtagttactctagcaaacttcaa |
100 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
827471 |
atcttgctcctcccagagataattctggtgactcccacacatcagaatgtatcaagtctagtatgtgtttgcttctagtagttactctagcaaacttcaa |
827372 |
T |
|
| Q |
101 |
tctatgttgcttgcttatcacacagtgctcacagaatggtaaatttactgtcttgagcccgtgaaggagattgcgttccgcaaggacttttaagccacgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
827371 |
tctatgttgcttgcttatcacacagtgctcacagaatggtaaatttactgtcttgagcccgtgaaggagattgcgttccacaaggactttcaagccacgt |
827272 |
T |
|
| Q |
201 |
tctgacatatggcctagtctttga |
224 |
Q |
| |
|
|| ||||||||||||||||||||| |
|
|
| T |
827271 |
tcagacatatggcctagtctttga |
827248 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 31 - 183
Target Start/End: Original strand, 8136818 - 8136971
Alignment:
| Q |
31 |
actcccacacatcagaatgtatcaagtctagtatgtgtttgcttctagtagttactctagcaaacttcaatctatgttgcttgcttatcacacagtgctc |
130 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8136818 |
actcccacacatcataatggatcaagtctagtatatgtttgcttctagtagttactctagcaaacttcaatctatgttgcttgcttatcacacagtgctc |
8136917 |
T |
|
| Q |
131 |
acagaatggtaaatttactgtcttgagcccgtg-aaggagattgcgttccgcaa |
183 |
Q |
| |
|
|||||||||||| ||||| ||||| |||| ||| |||||||||||||||||||| |
|
|
| T |
8136918 |
acagaatggtaagtttaccgtcttcagcctgtgaaaggagattgcgttccgcaa |
8136971 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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