View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_665 (Length: 224)
Name: NF10145A_low_665
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_665 |
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| [»] chr6 (8 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 5 - 224
Target Start/End: Original strand, 9171107 - 9171326
Alignment:
| Q |
5 |
gcataaggccgccctttaaaaacgcatatgtcttcgaatttcattgacatgtcagggttcaccttccaatcctcatcaccacatttcaaaagtaacggat |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
9171107 |
gcataaggccgccctttaaaaacgcatatgtcttcgaatttcattgacatgtcagggatcaccttccaatcctcatcaccacatttcaaaagtaacggat |
9171206 |
T |
|
| Q |
105 |
atggaggaaaggctaacatgccaacaacgagaggnnnnnnnccatggcacgtgacagcaacgacctttttagggtacatgtattcttgactgatgatgag |
204 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
9171207 |
atggaggaaaggctaacatgccaacaacgagaggtttttttccatggcacgtgacagcaacgacctttttagggtacatgtattctttactgatgatgag |
9171306 |
T |
|
| Q |
205 |
ttgacggttgattttgacgt |
224 |
Q |
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|||||||||||||||||||| |
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| T |
9171307 |
ttgacggttgattttgacgt |
9171326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 5 - 224
Target Start/End: Complemental strand, 9159321 - 9159102
Alignment:
| Q |
5 |
gcataaggccgccctttaaaaacgcatatgtcttcgaatttcattgacatgtcagggttcaccttccaatcctcatcaccacatttcaaaagtaacggat |
104 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
9159321 |
gcataaggccgccctttaaaaacacatatgtcttcgaatttcattgacatgtcagggatcaccttccaatcctcatcaccacatttcaaaagtaacggat |
9159222 |
T |
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| Q |
105 |
atggaggaaaggctaacatgccaacaacgagaggnnnnnnnccatggcacgtgacagcaacgacctttttagggtacatgtattcttgactgatgatgag |
204 |
Q |
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| T |
9159221 |
acggaggaaaggctaacatgccaacaacgagaggtgtttttccatggcacgtgacagcaacgacctttttagggtacatgtattcttgactgatgatgag |
9159122 |
T |
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| Q |
205 |
ttgacggttgattttgacgt |
224 |
Q |
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|||||||||||||||||||| |
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| T |
9159121 |
ttgacggttgattttgacgt |
9159102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 7013135 - 7013306
Alignment:
| Q |
15 |
gccctttaaaaacgcatatgtcttcgaatttcattgacatgtcagggttcaccttccaatcctcatcaccacatttcaaaagtaacggatatggaggaaa |
114 |
Q |
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||||||| |||| ||| |||||| |||||||| ||||||||||||| |||||||||| | ||||||||||||||||| |||||| || | ||| ||| | |
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| T |
7013135 |
gccctttgaaaaggcagatgtctccgaatttcgttgacatgtcaggtatcaccttccatttctcatcaccacatttcacaagtaatggctgtgggggaga |
7013234 |
T |
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| Q |
115 |
ggctaacatgccaacaacgagaggnnnnnnnccatggcacgtgacagcaacgacctttttagggtacatgta |
186 |
Q |
| |
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|| |||| ||||||||| |||||| ||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
7013235 |
ggttaacgtgccaacaatgagaggttttttcccatggcacgtaacaacaacgacctttttagggtacatgta |
7013306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 7026071 - 7026242
Alignment:
| Q |
15 |
gccctttaaaaacgcatatgtcttcgaatttcattgacatgtcagggttcaccttccaatcctcatcaccacatttcaaaagtaacggatatggaggaaa |
114 |
Q |
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|||||||||| | ||| |||||| |||||||| ||||||||||||| |||| ||||| | ||||||||||||||||| ||||||||| | ||| ||| | |
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| T |
7026071 |
gccctttaaagaggcagatgtctccgaatttcgttgacatgtcaggtatcacattccatttctcatcaccacatttcataagtaacggctgtgggggaga |
7026170 |
T |
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| Q |
115 |
ggctaacatgccaacaacgagaggnnnnnnnccatggcacgtgacagcaacgacctttttagggtacatgta |
186 |
Q |
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|| ||| ||||||||| |||||| ||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
7026171 |
ggttaatgtgccaacaatgagaggttttttcccatggcacgtaacaacaacgacctttttagggtacatgta |
7026242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 6 - 118
Target Start/End: Original strand, 7041778 - 7041890
Alignment:
| Q |
6 |
cataaggccgccctttaaaaacgcatatgtcttcgaatttcattgacatgtcagggttcaccttccaatcctcatcaccacatttcaaaagtaacggata |
105 |
Q |
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||||||||| ||||||||||| |||||||||| ||||| | |||||||||| || |||||||||| | | ||||||||||||||||||||||||| | |
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| T |
7041778 |
cataaggccaccctttaaaaaggcatatgtctccgaatcccgttgacatgtcgaggatcaccttccatttcccatcaccacatttcaaaagtaacggctg |
7041877 |
T |
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| Q |
106 |
tggaggaaaggct |
118 |
Q |
| |
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||| ||||||||| |
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| T |
7041878 |
tgggggaaaggct |
7041890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 8 - 173
Target Start/End: Original strand, 7030121 - 7030286
Alignment:
| Q |
8 |
taaggccgccctttaaaaacgcatatgtcttcgaatttcattgacatgtcagggttcaccttccaatcctcatcaccacatttcaaaagtaacggatatg |
107 |
Q |
| |
|
||||||||||||||||||| |||||||||| | || ||| |||||||| ||| |||||||||| | |||||| || |||||||||||| || ||||| |
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| T |
7030121 |
taaggccgccctttaaaaaggcatatgtctccaaaattcgctgacatgttggggatcaccttccagttctcatctccgaatttcaaaagtaccgaatatg |
7030220 |
T |
|
| Q |
108 |
gaggaaaggctaacatgccaacaacgagaggnnnnnnnccatggcacgtgacagcaacgacctttt |
173 |
Q |
| |
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| ||| |||||||| |||||||| |||||| ||||||||||| ||||||| ||||||| |
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| T |
7030221 |
ggggagaggctaacgcgccaacaatgagaggcttttttccatggcacgtagcagcaacaacctttt |
7030286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 5 - 186
Target Start/End: Original strand, 7047111 - 7047292
Alignment:
| Q |
5 |
gcataaggccgccctttaaaaacgcatatgtcttcgaatttcattgacatgtcagggttcaccttccaatcctcatcaccacatttcaaaagtaacggat |
104 |
Q |
| |
|
||||||| ||||||||||||| |||||||||| |||||| ||| |||||||||||| |||||||||| | |||| || |||||| | |||||||| | |
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| T |
7047111 |
gcataagcacgccctttaaaaaggcatatgtctccgaattccatcgacatgtcagggatcaccttccatttttcattgccgcatttcgacagtaacggct |
7047210 |
T |
|
| Q |
105 |
atggaggaaaggctaacatgccaacaacgagaggnnnnnnnccatggcacgtgacagcaacgacctttttagggtacatgta |
186 |
Q |
| |
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||| || ||| || || |||||| |||||| ||||||||||||||||||| |||||||| |||| ||||||| |
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| T |
7047211 |
ctgggtgagaggatattgtggcaacaatgagagggttttttccatggcacgtgacagcaatgaccttttcagggaacatgta |
7047292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 178
Target Start/End: Original strand, 7041918 - 7041950
Alignment:
| Q |
146 |
ccatggcacgtgacagcaacgacctttttaggg |
178 |
Q |
| |
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||||||||||||||||||||||||||| ||||| |
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| T |
7041918 |
ccatggcacgtgacagcaacgacctttataggg |
7041950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 8 - 189
Target Start/End: Original strand, 12041935 - 12042116
Alignment:
| Q |
8 |
taaggccgccctttaaaaacgcatatgtcttcgaatttcattgacatgtcagggttcaccttccaatcctcatcaccacatttcaaaagtaacggatatg |
107 |
Q |
| |
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||||||||||||||||||| |||||||||| |||| ||| ||||||||| ||| |||||||||| | |||||| || |||||||||||| || ||||| |
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| T |
12041935 |
taaggccgccctttaaaaaggcatatgtctccgaaattcgctgacatgtcggggatcaccttccagttctcatctccgaatttcaaaagtaccgaatatg |
12042034 |
T |
|
| Q |
108 |
gaggaaaggctaacatgccaacaacgagaggnnnnnnnccatggcacgtgacagcaacgacctttttagggtacatgtattc |
189 |
Q |
| |
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| ||| |||||||| |||||||| |||||| ||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
12042035 |
ggggagaggctaacgcgccaacaatgagaggcttttttccatggcacgtagcagcaataacctttttagggtacatgtattc |
12042116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 9448613 - 9448681
Alignment:
| Q |
5 |
gcataaggccgccctttaaaaacgcatatgtcttcgaatttcattgacatgtcagggttcaccttccaa |
73 |
Q |
| |
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||||||||||||||||| |||| ||| |||||| ||||||| ||||||||||| ||| ||||||||||| |
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| T |
9448613 |
gcataaggccgccctttgaaaaagcagatgtctccgaatttaattgacatgtcggggatcaccttccaa |
9448681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 9344153 - 9344219
Alignment:
| Q |
14 |
cgccctttaaaaacgcatatgtcttcgaatttcattgacatgtcagggttcaccttccaatcctcat |
80 |
Q |
| |
|
|||||||| |||| ||| |||||| | ||||| ||||||||||| ||| |||||||||||| ||||| |
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| T |
9344153 |
cgccctttgaaaaggcagatgtctccaaatttaattgacatgtcggggatcaccttccaattctcat |
9344219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 3684409 - 3684449
Alignment:
| Q |
146 |
ccatggcacgtgacagcaacgacctttttagggtacatgta |
186 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3684409 |
ccatggcacgtgatagcaacgacctttttagggtacatgta |
3684449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 3676244 - 3676284
Alignment:
| Q |
146 |
ccatggcacgtgacagcaacgacctttttagggtacatgta |
186 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||||| |
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|
| T |
3676244 |
ccatggcatgtgacaacaacgacctttttagggtacatgta |
3676284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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