View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10145A_low_668 (Length: 223)
Name: NF10145A_low_668
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_668 |
 | |
|
| [»] chr2 (4 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 31658743 - 31658965
Alignment:
| Q |
1 |
atatgaggttatctgatgagaacaattgattttgagaagaataatcatcatgaatctcttccttaggatcctctattgtagatgcaagaaatggcaatgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31658743 |
atatgaggttatctgatgagaacaattgattttgagaagaataatcatcatgaatctcttccttaggatcctcttttgtagatgcaagaaatggcaatgg |
31658842 |
T |
|
| Q |
101 |
tgatggtggaaacgagttttcttctttaattggaatgttgttatcaaaactgagtaatatagaagagtcatttgatgacacaatggattccaaatttata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
31658843 |
tgatggtggaaacgagttttcttctttaattggaatgttgttatcaaaactaagtaatatagaagagtcatttgatgacaaaatggattccaaatttata |
31658942 |
T |
|
| Q |
201 |
tctgaatgcaaataacttttgca |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
31658943 |
tctgaatgcaaataacttttgca |
31658965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 170
Target Start/End: Complemental strand, 31650457 - 31650298
Alignment:
| Q |
17 |
tgagaacaattgattttgagaagaataatcatcatgaatctcttccttaggatcctctattgtagatgcaagaaatggcaat---ggtgatggtggaaac |
113 |
Q |
| |
|
|||||||||||| ||||||| | ||| ||||| ||| ||||||||||| ||||| || ||||||||||||||| ||||||| ||||||||| |||| |
|
|
| T |
31650457 |
tgagaacaattggttttgaggaaaatgatcatgatgtatctcttccttgggatctccttttgtagatgcaagaagtggcaatggtggtgatggtcgaaat |
31650358 |
T |
|
| Q |
114 |
gagttttcttctttaattggaatgttg---ttatcaaaactgagtaatatagaagagtca |
170 |
Q |
| |
|
| | ||||| |||| ||| ||||||| ||||| ||||| |||||||| ||||||||| |
|
|
| T |
31650357 |
ggatattcttgtttatttgaaatgttgttattatcgaaactaagtaatattgaagagtca |
31650298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 208
Target Start/End: Complemental strand, 31657342 - 31657268
Alignment:
| Q |
134 |
aatgttgttatcaaaactgagtaatatagaagagtcatttgatgacacaatggattccaaatttatatctgaatg |
208 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||| | ||| |||||||||||| ||||| |||||||| |
|
|
| T |
31657342 |
aatgttgttatcgaaactaagtaatatagaagagtcatcgtagcacaaaatggattccaattttatgtctgaatg |
31657268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 31657434 - 31657390
Alignment:
| Q |
54 |
atctcttccttaggatcctctattgtagatgcaagaaatggcaat |
98 |
Q |
| |
|
||||||||||| || |||||| ||||||||||||||| ||||||| |
|
|
| T |
31657434 |
atctcttccttgggttcctcttttgtagatgcaagaagtggcaat |
31657390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University