View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_67 (Length: 404)

Name: NF10145A_low_67
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_67
NF10145A_low_67
[»] chr7 (18 HSPs)
chr7 (6-383)||(12153325-12153703)
chr7 (7-298)||(10203332-10203620)
chr7 (7-267)||(9652855-9653115)
chr7 (29-333)||(12356174-12356478)
chr7 (13-378)||(19018781-19019145)
chr7 (7-302)||(19335297-19335594)
chr7 (19-248)||(23008791-23009020)
chr7 (7-230)||(30238609-30238833)
chr7 (7-230)||(30253009-30253233)
chr7 (131-302)||(11352179-11352351)
chr7 (131-255)||(8281048-8281174)
chr7 (131-248)||(11968831-11968947)
chr7 (7-263)||(10939655-10939914)
chr7 (7-106)||(11352670-11352769)
chr7 (131-216)||(5223645-5223730)
chr7 (131-216)||(10877782-10877867)
chr7 (141-206)||(14971156-14971221)
chr7 (141-206)||(15400632-15400697)
[»] chr4 (7 HSPs)
chr4 (8-383)||(16661370-16661743)
chr4 (7-267)||(13523880-13524140)
chr4 (7-215)||(20323663-20323871)
chr4 (7-263)||(11554181-11554434)
chr4 (8-225)||(15782841-15783059)
chr4 (131-216)||(15699262-15699347)
chr4 (11-118)||(27919683-27919791)
[»] chr2 (8 HSPs)
chr2 (7-383)||(17980382-17980757)
chr2 (7-172)||(22683881-22684047)
chr2 (7-263)||(26023413-26023672)
chr2 (137-376)||(17984334-17984560)
chr2 (7-216)||(17335438-17335648)
chr2 (11-110)||(39667079-39667178)
chr2 (131-215)||(18371592-18371676)
chr2 (11-63)||(23663013-23663065)
[»] chr5 (12 HSPs)
chr5 (7-362)||(29830976-29831331)
chr5 (7-286)||(27735724-27736003)
chr5 (10-226)||(22847202-22847417)
chr5 (7-300)||(23273973-23274265)
chr5 (7-255)||(16700968-16701215)
chr5 (7-216)||(19527202-19527411)
chr5 (131-300)||(25916836-25917006)
chr5 (89-229)||(20972293-20972435)
chr5 (11-110)||(24660762-24660861)
chr5 (13-215)||(20057105-20057308)
chr5 (131-302)||(18958525-18958697)
chr5 (7-110)||(24511123-24511226)
[»] chr1 (17 HSPs)
chr1 (7-371)||(25380245-25380598)
chr1 (7-285)||(17317182-17317460)
chr1 (9-255)||(17199684-17199929)
chr1 (7-215)||(20405576-20405785)
chr1 (7-267)||(29983912-29984172)
chr1 (13-364)||(23510495-23510844)
chr1 (7-199)||(15546197-15546387)
chr1 (13-248)||(18576885-18577120)
chr1 (13-357)||(13332610-13332954)
chr1 (166-302)||(22507228-22507365)
chr1 (13-125)||(24592182-24592295)
chr1 (7-110)||(22045541-22045644)
chr1 (7-216)||(18934857-18935067)
chr1 (306-383)||(18576760-18576837)
chr1 (11-110)||(25221074-25221173)
chr1 (149-255)||(17774380-17774485)
chr1 (11-63)||(19957422-19957474)
[»] scaffold0111 (1 HSPs)
scaffold0111 (7-282)||(25992-26264)
[»] chr3 (9 HSPs)
chr3 (7-362)||(42368734-42369086)
chr3 (7-263)||(24507788-24508048)
chr3 (7-263)||(25922003-25922262)
chr3 (7-254)||(14889303-14889549)
chr3 (7-158)||(24697816-24697969)
chr3 (167-225)||(16974172-16974231)
chr3 (131-226)||(26883597-26883691)
chr3 (131-216)||(1343441-1343526)
chr3 (11-63)||(13885773-13885825)
[»] scaffold0125 (1 HSPs)
scaffold0125 (7-199)||(6354-6547)
[»] chr8 (4 HSPs)
chr8 (7-199)||(16647784-16647977)
chr8 (110-355)||(24374589-24374835)
chr8 (13-175)||(22741620-22741782)
chr8 (130-216)||(17125222-17125308)
[»] scaffold0561 (1 HSPs)
scaffold0561 (7-255)||(598-844)
[»] scaffold0103 (2 HSPs)
scaffold0103 (7-255)||(35043-35290)
scaffold0103 (7-267)||(39345-39605)
[»] chr6 (9 HSPs)
chr6 (89-215)||(25930948-25931074)
chr6 (22-154)||(16598661-16598793)
chr6 (110-267)||(24454415-24454572)
chr6 (14-233)||(22728069-22728287)
chr6 (13-240)||(24005341-24005567)
chr6 (7-83)||(25929619-25929695)
chr6 (106-245)||(14881609-14881746)
chr6 (313-358)||(14881814-14881859)
chr6 (185-263)||(9337916-9337996)
[»] scaffold0032 (2 HSPs)
scaffold0032 (109-255)||(70668-70814)
scaffold0032 (7-69)||(70578-70639)


Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 6 - 383
Target Start/End: Complemental strand, 12153703 - 12153325
Alignment:
Q  6 ggacatcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctaggg-taatttgaaggaattcttgtaat 104  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| || |||||||| |||||||||||||||||||||||    
T  12153703 ggacatcaagaagcaccaatttcaaagggtatttgaagattgggggagtggtttcatatgaattgaagagctaggggtaatttgaaggaattcttgtaat 12153604  T
Q  105 cacattgtaatcaaacattcatattctagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtga 204  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | | |||||||| ||||||||||||||||||||||||||||    
T  12153603 cacattgtaatcaaacattcatattctagtggaattccttggtggagacgttttccatcaaggagagtagacgtagcccgaagcgaggaagaaagggtga 12153504  T
Q  205 actactataaaatctcggtgttgtttctcgtccctttcctctttaattttgctaattgtgtatatgcttgcttgataaattgttagaatagaaattgaac 304  Q
    ||||||||||||||||  ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  12153503 actactataaaatctcaatgtcgtttctcttccctttcctctttaattttgctaattgtgtatatgcttgcttgataaattgttggaatagaaattgaac 12153404  T
Q  305 atgatcttgtttcaacttgttaaacttgacttaattcattgcattaggttttctcttaatctacattgatcacagttga 383  Q
     |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||| ||||    
T  12153403 gtgatcttgtttcaacttgttaaacttgacttaattcattgaattaggttttcccttaatctatattgatcacatttga 12153325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 7 - 298
Target Start/End: Complemental strand, 10203620 - 10203332
Alignment:
Q  7 gacatcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatca 106  Q
    ||||| ||||||||||||||||||| | ||||  ||||||||||||||| ||||||| ||||| || |   |||||| ||| ||||||||||||||||||    
T  10203620 gacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcataggaattgaagaatcagggtagtttcaaggaattcttgtaatca 10203521  T
Q  107 cattgtaatcaaacattcatattctagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||   || |||| |||| ||||| ||||||||||| |||||| |||||    
T  10203520 cattgtaatcaaacattcatattctagtggaagtccttggtggagacgttttcc---atcaagaatagacgtagctcgaagcgaggacgaaaggttgaac 10203424  T
Q  207 tactataaaatctcggtgttgtttctcgtccctttcctctttaattttg-ctaattgtgtatatgcttgcttgataaattgttagaatagaaa 298  Q
    |||||| |||||||||||| ||||||| ||| | |||||||||| ||||  | ||||||||| || |||||||||||||||||||| ||||||    
T  10203423 tactat-aaatctcggtgtcgtttctcttccttatcctctttaactttgattgattgtgtatttgattgcttgataaattgttagagtagaaa 10203332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 7 - 267
Target Start/End: Complemental strand, 9653115 - 9652855
Alignment:
Q  7 gacatcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatca 106  Q
    ||||||||||||||||||||||||| ||| || ||| |||||||||||| ||||||| ||||| |||| |||||||| ||| ||||||||||||| ||||    
T  9653115 gacatcaagaagcaccaatttcaaaaggttttgaaa-attgggggagtgattgcataagaattgaataactagggtagtttcaaggaattcttgtcatca 9653017  T
Q  107 cattgtaatcaaacattca-tattctagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaa 205  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| | |||||||||| ||||||| |||| | || |||||||||||    
T  9653016 cattgtaatcaaacattcaatattctagtggaagtccttggtggaggcgttttccatcaagaagagtagacgtagcccaaagcaatgacgaaagggtgaa 9652917  T
Q  206 ctactataaaatctcggtgttgtttctcgtccctttcctctttaattttgc-taattgtgtat 267  Q
    ||||||| ||||||||||||| | |||| || |  |||||||||||||||| |||||||||||    
T  9652916 ctactat-aaatctcggtgttttctctcttctcaatcctctttaattttgcttaattgtgtat 9652855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 29 - 333
Target Start/End: Original strand, 12356174 - 12356478
Alignment:
Q  29 aaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatcacattgtaatcaaacattcatat 128  Q
    ||||| ||||| ||||||||| |||||  |||||| ||||| || | ||  |||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  12356174 aaaggttatttgaagattgggagagtgactgcataggaattgaagaactgtggtagtttcaaggaattcttgtaatcacattgtaatcaaacattcatat 12356273  T
Q  129 tctagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaactactataaaatctcggtgttgt 228  Q
    | |||||||||||||||||||||||||||| ||| | |||||||| | |||||| ||||||| || ||||| |  ||||||||| ||||||||||||  |    
T  12356274 tatagtggaagtccttggtggagacgtttttcatcaagaagagtaaacgtagcctgaagcgacgacgaaagagcaaactactat-aaatctcggtgtctt 12356372  T
Q  229 ttctcgtccctttcctctttaattttg-ctaattgtgtatatgcttgcttgataaattgttagaatagaaattgaacatgatcttgtttcaacttgttaa 327  Q
     |||| || || |||||||||||||||  ||||| || || || |||||||||||||||||||| ||||||||||   |||||| | ||||  |||||||    
T  12356373 ctctcttctctatcctctttaattttgattaattttggatttgattgcttgataaattgttagagtagaaattgagtgtgatctaggttcattttgttaa 12356472  T
Q  328 acttga 333  Q
    ||||||    
T  12356473 acttga 12356478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 13 - 378
Target Start/End: Original strand, 19018781 - 19019145
Alignment:
Q  13 aagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatcaca---t 109  Q
    ||||| ||||||||||||||||||||| ||||||||||||||| ||||||  ||||| || |  |||||||||| |||||| ||||||||||||||   |    
T  19018781 aagaaacaccaatttcaaagggtatttgaagattgggggagtgattgcatgagaattgaaaat-tagggtaatt-gaaggagttcttgtaatcacaacat 19018878  T
Q  110 tgtaatcaaacattcatattctagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaactac 209  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||| |||| | ||| |||||||||| ||||||| ||||| |||| ||  ||||||    
T  19018879 tgtaatcaaacattca-attttagtggaagtccttggtggagacgtttaccatcaagaaaagtagatgtatcccgaagtgaggacgaaatggaaaactac 19018977  T
Q  210 tataaaatctcggtgttgtttctcgtccctttcctctttaattttgct--aattgtgtatatgcttgcttgataaattgttagaatagaaattgaacatg 307  Q
    | | ||||||||||||  |||||  ||| ||||||||||||||| | |    ||| ||||||  ||| ||||| |||| ||||||| | | |||||  ||    
T  19018978 tgt-aaatctcggtgtcatttctgttccttttcctctttaatttcgtttgttttgagtatatatttgtttgat-aattattagaattg-atttgaatgtg 19019074  T
Q  308 atcttgtttcaacttgttaaacttgacttaattcattgcattaggttttctcttaatctacattgatcaca 378  Q
    |||||||||||  ||||||||||||||||||||||||| ||| ||||||||||||||  |||||| |||||    
T  19019075 atcttgtttcattttgttaaacttgacttaattcattgaattcggttttctcttaattcacattgttcaca 19019145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 7 - 302
Target Start/End: Complemental strand, 19335594 - 19335297
Alignment:
Q  7 gacatcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatca 106  Q
    |||||||||||||| |||||||||||| ||||| |||||||| |||||| ||||||| ||||| || | |||||||  ||| ||||||||||||||| ||    
T  19335594 gacatcaagaagcatcaatttcaaaggttatttgaagattggaggagtgattgcataggaattgaagaactagggtcttttcaaggaattcttgtaacca 19335495  T
Q  107 cattgtaatcaa--acattcatattctagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtga 204  Q
    ||||||||||||  |||||||||||| | ||||||||||||||||| || |||||||| | ||||||| || ||||  |||||| |||||||||||| ||    
T  19335494 cattgtaatcaaacacattcatattcgaatggaagtccttggtggaaacattttccatcaagaagagtggaggtaggtcgaagcaaggaagaaaggggga 19335395  T
Q  205 actactataaaatctcggtgttgtttctcgtccctttcctctttaattttg-ctaattgtgtatatgcttgcttgataaattgttagaatagaaattga 302  Q
    |||| ||| |||||||| |||  |  ||| |  || ||||||||||||| |  ||||  ||||| || |||||||||||||||||||| ||||||||||    
T  19335394 actattat-aaatctcgatgtcttcactcttttctatcctctttaatttagattaatcatgtatttgattgcttgataaattgttagagtagaaattga 19335297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 23008791 - 23009020
Alignment:
Q  19 caccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatcaca---ttgtaat 115  Q
    ||||||||||||||||||||| ||||||| ||||||  ||||||| ||||| || |  |||||||||| |||||| ||||||||||||||   |||||||    
T  23008791 caccaatttcaaagggtatttgaagattgtgggagtaattgcataggaattgaaaat-tagggtaatt-gaaggagttcttgtaatcacaacattgtaat 23008888  T
Q  116 caaacattcatattctagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaactactataaa 215  Q
    |||||||||| ||||||||||||||||||||| ||||||||||| || | |||||||| | ||| ||||| ||||||| |||||||  ||||||||| ||    
T  23008889 caaacattcaaattctagtggaagtccttggtagagacgttttctatcaagaagagtaaacgtaccccgaggcgaggatgaaaggggaaactactat-aa 23008987  T
Q  216 atctcggtgttgtttctcgtccctttcctcttt 248  Q
    |||||||||| ||||||| ||||||||||||||    
T  23008988 atctcggtgtcgtttctcttccctttcctcttt 23009020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 30238833 - 30238609
Alignment:
Q  7 gacatcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatca 106  Q
    |||||| ||||||||||| |||||||||||||| ||| |||||| ||||||| |||  |  || || | ||||| || ||| |||||| |||||||||||    
T  30238833 gacatcgagaagcaccaaattcaaagggtatttgaagtttggggaagtggttacatggg--ttgaagaactaggatagtttcaaggaactcttgtaatca 30238736  T
Q  107 catt-gtaatcaaacattcatattct-agtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtga 204  Q
    |||| |||||  |||||   || | | | ||||||||||||||||||||||||| ||  | |||||||||||||| |||||||||| || ||||||| ||    
T  30238735 catttgtaattcaacatctttactattactggaagtccttggtggagacgtttttcaccaagaagagtagatgtaacccgaagcgatgatgaaagggcga 30238636  T
Q  205 actactat-aaaatctcggtgttgttt 230  Q
    |||||||| ||||||||||||| ||||    
T  30238635 actactataaaaatctcggtgtagttt 30238609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 30253233 - 30253009
Alignment:
Q  7 gacatcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatca 106  Q
    |||||| ||||||||||| |||||||||||||| ||| |||||| ||||||| |||  |  || || | ||||| || ||| |||||| |||||||||||    
T  30253233 gacatcgagaagcaccaaattcaaagggtatttgaagtttggggaagtggttacatggg--ttgaagaactaggatagtttcaaggaactcttgtaatca 30253136  T
Q  107 catt-gtaatcaaacattcatattct-agtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtga 204  Q
    |||| |||||  |||||   || | | | ||||||||||||||||| ||||||| ||  | |||||||||||||| |||||||||| || ||||||| ||    
T  30253135 catttgtaattcaacatctttactattactggaagtccttggtggatacgtttttcaccaagaagagtagatgtaacccgaagcgatgacgaaagggcga 30253036  T
Q  205 actactat-aaaatctcggtgttgttt 230  Q
    |||||||| ||||||||||||| ||||    
T  30253035 actactataaaaatctcggtgtagttt 30253009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 131 - 302
Target Start/End: Complemental strand, 11352351 - 11352179
Alignment:
Q  131 tagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaactactat-aaaatctcggtgttg-t 228  Q
    |||||||| ||||| |||||| |||||| ||  | |||||||||||||||||| || ||| || |||||| ||||||||||| ||||| | ||||| | |    
T  11352351 tagtggaaatccttcgtggaggcgtttttcaccaagaagagtagatgtagcccaaaacgaagaggaaaggatgaactactataaaaatattggtgtcgtt 11352252  T
Q  229 ttctcgtccctttcctctttaattttgctaattgtgtatatgcttg-cttgataaattgttagaatagaaattga 302  Q
    ||||| ||| | ||||||||||||||| ||||  ||||||||||||  ||||| ||||  ||| |||||||||||    
T  11352251 ttctcttccttatcctctttaattttgataat--tgtatatgcttgaattgattaattcataggatagaaattga 11352179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 255
Target Start/End: Original strand, 8281048 - 8281174
Alignment:
Q  131 tagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaactactat-aaaatctcggtgttgtt 229  Q
    ||||||| | |||||||||||||||||| ||  | |||||||  | ||||||||||||||||| |||||||||||| ||||| ||||| ||||||| |||    
T  8281048 tagtggatgaccttggtggagacgtttttcaccaagaagagttaacgtagcccgaagcgaggacgaaagggtgaacaactataaaaatatcggtgtcgtt 8281147  T
Q  230 -tctcgtccctttcctctttaattttg 255  Q
     |||  ||| | |||||||||||||||    
T  8281148 ctcttttccttatcctctttaattttg 8281174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 248
Target Start/End: Original strand, 11968831 - 11968947
Alignment:
Q  131 tagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaactactataaaatctcggtgttgttt 230  Q
    |||||||||| |||| | ||||||||||| |  | |||||||||| ||| | ||||||||||| ||||  | ||||||||||||| || ||||||  |||    
T  11968831 tagtggaagttcttgatagagacgttttctaccaagaagagtagacgtacctcgaagcgaggatgaaaaagggaactactataaattc-cggtgtctttt 11968929  T
Q  231 ctcgtccctttcctcttt 248  Q
    ||| ||||||||||||||    
T  11968930 ctcttccctttcctcttt 11968947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 7 - 263
Target Start/End: Original strand, 10939655 - 10939914
Alignment:
Q  7 gacatcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatca 106  Q
    |||||||||||||||||| |||||||||||||| ||| ||   ||||||||| |||| |  || || | ||||| || ||| |||||| | ||||||| |    
T  10939655 gacatcaagaagcaccaaattcaaagggtatttgaagttttttggagtggttacataggggttgaagaactaggatagtttcaaggaacttttgtaatta 10939754  T
Q  107 ca-ttgtaatcaaacattcata-ttctagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtga 204  Q
    || |||||||  ||||||  || |  ||||||||||||||||||||   ||||| ||  | |||||||||| | | ||| || | ||||  |||||| ||    
T  10939755 catttgtaattcaacattgttactattagtggaagtccttggtggatgtgtttttcaccaagaagagtaga-gcatcccaaaacaaggacaaaagggcga 10939853  T
Q  205 actactat-aaaatctcggtgttgtt-tctcgtccctttcctctttaattttgctaattgt 263  Q
    |||||||| ||||| ||||||| ||| |||| ||| | ||||||||||||||| |||||||    
T  10939854 actactataaaaatttcggtgtcgttctctcttccttatcctctttaattttgataattgt 10939914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 11352769 - 11352670
Alignment:
Q  7 gacatcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatca 106  Q
    |||||||||||||||| | |||||||| ||||| ||| |||||||||||||| |||| |  || || | ||||| || ||| |||||| |||||||||||    
T  11352769 gacatcaagaagcacccaattcaaaggatatttgaagtttgggggagtggttacataggggttgaagaactaggatagtttcaaggaactcttgtaatca 11352670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 131 - 216
Target Start/End: Complemental strand, 5223730 - 5223645
Alignment:
Q  131 tagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaactactataaaa 216  Q
    ||||||| | ||||||| |||||||||| ||  | ||||||| || ||| ||||||||||||| |||||| ||||| |||||||||    
T  5223730 tagtggatgaccttggtagagacgtttttcaccaagaagagttgacgtaacccgaagcgaggacgaaaggatgaacaactataaaa 5223645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 131 - 216
Target Start/End: Complemental strand, 10877867 - 10877782
Alignment:
Q  131 tagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaactactataaaa 216  Q
    ||||||| | ||||||||||||| |||| ||  | ||||||| || ||||||| ||| ||||| |||||||||||| |||||||||    
T  10877867 tagtggatgaccttggtggagacatttttcaccaagaagagttgacgtagcccaaagagaggacgaaagggtgaacaactataaaa 10877782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 141 - 206
Target Start/End: Complemental strand, 14971221 - 14971156
Alignment:
Q  141 ccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaac 206  Q
    ||||||||||| |||||| ||  | ||||||| || |||||||||||||||||||||| |||||||    
T  14971221 ccttggtggaggcgtttttcaccaagaagagttgacgtagcccgaagcgaggaagaaaaggtgaac 14971156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 141 - 206
Target Start/End: Complemental strand, 15400697 - 15400632
Alignment:
Q  141 ccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaac 206  Q
    ||||||||||| |||||| ||  | ||||||| || |||||||||||||||||||||| |||||||    
T  15400697 ccttggtggaggcgtttttcaccaagaagagttgacgtagcccgaagcgaggaagaaaaggtgaac 15400632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 383
Target Start/End: Original strand, 16661370 - 16661743
Alignment:
Q  8 acatcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatcac 107  Q
    |||||||||||||||||||||||||| ||||| | |||||||||||||||||||||  |||| || |||||||||| |||||||||||||||||||||||    
T  16661370 acatcaagaagcaccaatttcaaaggatatttgatgattgggggagtggttgcatagtaattgaagagctagggtagtttgaaggaattcttgtaatcac 16661469  T
Q  108 attgtaatcaaacattcatattctagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaact 207  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||  |  || |||||| |||||||||| |||||| ||||||| ||||     
T  16661470 attgtaatcaaacattcatattctagtggaagtccgtggtggagacgttttgcaccaaaaaaagtagacgtagcccgaaacgaggacgaaagggggaac- 16661568  T
Q  208 actataaaatctcggtgttgtttctcgtccctttcctctttaattttgctaattgtgtatatgcttgcttgataaattgttagaatagaaattgaacatg 307  Q
    ||||| |||||||||||| |||||||  |||||||||||||||||||| ||||| ||||||| | || ||||||||||||||||||| ||||||||  ||    
T  16661569 actat-aaatctcggtgtcgtttctctgccctttcctctttaattttgttaattatgtatatccatgtttgataaattgttagaatataaattgaatgtg 16661667  T
Q  308 atcttgtttcaacttgttaaacttgacttaattcattgcattaggttttctcttaatctacattgatcacagttga 383  Q
    |||||||||||||||||||||||| | ||||||||||| ||||| ||||||||||||  || ||||||||| ||||    
T  16661668 atcttgtttcaacttgttaaacttaaattaattcattgaattagattttctcttaattaactttgatcacatttga 16661743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 7 - 267
Target Start/End: Complemental strand, 13524140 - 13523880
Alignment:
Q  7 gacatcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatca 106  Q
    ||||||||||||||||||||||||| ||| || ||| |||||||||||| ||||||| ||||| |||| |||||||| ||| ||||||||||||| ||||    
T  13524140 gacatcaagaagcaccaatttcaaaaggttttgaaa-attgggggagtgattgcataagaattgaataactagggtagtttcaaggaattcttgtcatca 13524042  T
Q  107 cattgtaatcaaacattca-tattctagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaa 205  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| | |||||||||| ||||||| |||| | || |||||||||||    
T  13524041 cattgtaatcaaacattcaatattctagtggaagtccttggtggaggcgttttccatcaagaagagtagacgtagcccaaagcaatgacgaaagggtgaa 13523942  T
Q  206 ctactataaaatctcggtgttgtttctcgtccctttcctctttaattttgc-taattgtgtat 267  Q
    ||||||| ||||||||||||| | |||| || |  |||||||||||||||| |||||||||||    
T  13523941 ctactat-aaatctcggtgttttctctcttctcaatcctctttaattttgcttaattgtgtat 13523880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 7 - 215
Target Start/End: Complemental strand, 20323871 - 20323663
Alignment:
Q  7 gacatcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatca 106  Q
    |||||||||||||||||||| |||||| ||||| ||||||||||||||| ||| ||| ||||| || | ||| |||| ||| ||||||||||||||||||    
T  20323871 gacatcaagaagcaccaattgcaaaggttatttgaagattgggggagtgattgtataggaattgaaaaactaaggtagtttcaaggaattcttgtaatca 20323772  T
Q  107 cattgtaatcaaacattcatattctagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaac 206  Q
    ||||||||| ||||||| ||||||||||||||||||||||||| ||  |||||||| | |||||||||| |||||| ||||| || ||||||| | ||||    
T  20323771 cattgtaataaaacattaatattctagtggaagtccttggtggggaaattttccatcaagaagagtagaagtagcctgaagcaagaaagaaagagcgaac 20323672  T
Q  207 tactataaa 215  Q
    |||||||||    
T  20323671 tactataaa 20323663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 7 - 263
Target Start/End: Complemental strand, 11554434 - 11554181
Alignment:
Q  7 gacatcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatca 106  Q
    |||||||||||||||||| |||||||||||||| ||| |  ||||||||||| |||| |  || || | | |||||| ||| |||||| |||||||||||    
T  11554434 gacatcaagaagcaccaaattcaaagggtattttaagttgtggggagtggttacataggggttgaagaaccagggtagttttaaggaactcttgtaatca 11554335  T
Q  107 cat-tgtaatcaaacattcatattctagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaa 205  Q
    ||| ||||||  ||||||  ||   |||||||| |||||||||||  |||||| || ||  || |||||||||||||||||||||| | |||      ||    
T  11554334 catctgtaattcaacattgttacattagtggaaatccttggtggatgcgtttttcacaaaaaaaagtagatgtagcccgaagcgagtacgaa------aa 11554241  T
Q  206 ctactat-aaaatctcggtgttgt-ttctcgtccctttcctctttaattttgctaattgt 263  Q
    ||||||| |||| ||||||||||| ||||| ||| | ||||||||||||||| |||||||    
T  11554240 ctactataaaaacctcggtgttgtcttctcttccttatcctctttaattttgataattgt 11554181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 8 - 225
Target Start/End: Original strand, 15782841 - 15783059
Alignment:
Q  8 acatcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatcac 107  Q
    ||||||||| ||||||| || ||||| ||||| ||| ||||||||||| || |||| |  || || | ||||| || ||| |||||| ||||||||||||    
T  15782841 acatcaagatgcaccaaattaaaaggttatttgaagtttgggggagtgcttacataggggttgaagaactaggatagtttcaaggaactcttgtaatcac 15782940  T
Q  108 attgtaatcaaacattcatattc-tagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaac 206  Q
    |||   || |||||||  || |  |||||||||||||||||||||  ||||||   || |||||||||||||||| ||||||||||| ||||| | ||||    
T  15782941 atttgtattaaacattgttactaatagtggaagtccttggtggaggtgttttcaccaa-gaagagtagatgtagctcgaagcgaggacgaaagagcgaac 15783039  T
Q  207 tactat-aaaatctcggtgt 225  Q
    |||||| |||||||||||||    
T  15783040 tactataaaaatctcggtgt 15783059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 131 - 216
Target Start/End: Complemental strand, 15699347 - 15699262
Alignment:
Q  131 tagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaactactataaaa 216  Q
    ||||||| | |||||||||||||||||| ||  | ||  ||| |||||||||||||| |||||||||||||||||| |||||||||    
T  15699347 tagtggatgaccttggtggagacgtttttcaccaagactagttgatgtagcccgaagtgaggaagaaagggtgaacaactataaaa 15699262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 118
Target Start/End: Complemental strand, 27919791 - 27919683
Alignment:
Q  11 tcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagg-gtaatttgaaggaattcttgtaatcacat 109  Q
    ||||| |||||||| |||||||| ||||| ||| ||||||||||| ||||||| |  || || |  ||||  |||||| ||||||||||||||| |||||    
T  27919791 tcaaggagcaccaaattcaaaggttatttgaagtttgggggagtgtttgcataggggttgaagaattaggtttaatttcaaggaattcttgtaaacacat 27919692  T
Q  110 tgtaatcaa 118  Q
    |||| ||||    
T  27919691 tgtattcaa 27919683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 170; Significance: 4e-91; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 7 - 383
Target Start/End: Original strand, 17980382 - 17980757
Alignment:
Q  7 gacatcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatca 106  Q
    ||||||||||||||||||||||||| || |||| |||||||||||||||||| |||| ||||| || |||||| ||| |||||| |||||||||||||||    
T  17980382 gacatcaagaagcaccaatttcaaatggaatttgaagattgggggagtggttccataggaattgaagagctagagtagtttgaatgaattcttgtaatca 17980481  T
Q  107 cattgtaatcaaacattcatattctagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaac 206  Q
    |||||||||||||||||||  || |||||||||||||||||||||| ||||||||| | ||||||||| |||| ||||||| ||||| ||||||| ||||    
T  17980482 cattgtaatcaaacattcaatttttagtggaagtccttggtggagaggttttccatcaagaagagtaggtgtaccccgaagtgaggacgaaaggg-gaac 17980580  T
Q  207 tactataaaatctcggtgttg--tttctcgtccctttcctctttaattttg-ctaattgtgtatatgcttgcttgataaattgttagaatagaaattgaa 303  Q
    |||||||||  ||||||||||  |  ||| | ||||||||||||||||| |  ||||||| ||| |||||| ||||||||||||||||| || |||||||    
T  17980581 tactataaa--ctcggtgttgaataactctttcctttcctctttaatttcgtttaattgtctatgtgcttgtttgataaattgttagaacag-aattgaa 17980677  T
Q  304 catgatcttgtttcaacttgttaaacttgacttaattcattgcattaggttttctcttaatctacattgatcacagttga 383  Q
      |||||||||| ||||||||||||| ||  ||||||||||| |||||||||| | |||||| |||||||||||| ||||    
T  17980678 tgtgatcttgttccaacttgttaaacctggtttaattcattgaattaggttttgtgttaatccacattgatcacatttga 17980757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 7 - 172
Target Start/End: Complemental strand, 22684047 - 22683881
Alignment:
Q  7 gacatcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatca 106  Q
    ||||||||||||||| ||||||||||| ||||| ||||||||||| ||  || |||| ||||| || |  || |||| ||| |||||||| |||||||||    
T  22684047 gacatcaagaagcactaatttcaaaggttatttgaagattgggggtgttattccataggaattgaagaattaaggtagttttaaggaatttttgtaatca 22683948  T
Q  107 cattgtaatcaaacattc-atattctagtggaagtccttggtggagacgttttccataatgaagagt 172  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||| | |||||||    
T  22683947 cattgtaatcaaacattcaatattctattggaagtccttggtggagatgttttccatcaagaagagt 22683881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 7 - 263
Target Start/End: Original strand, 26023413 - 26023672
Alignment:
Q  7 gacatcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatca 106  Q
    |||||||||||||||||| |||||||||||||| ||| |||||||||||||| |||| |  || |  | ||||| || ||| |||||| ||||| |||||    
T  26023413 gacatcaagaagcaccaaattcaaagggtatttgaagtttgggggagtggttacataggggttgacgaactaggatagtttcaaggaactcttgcaatca 26023512  T
Q  107 catt-gtaatcaaacattcatattct-agtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtga 204  Q
    |||| ||| || | ||||  || | | ||||||||||||||||||||  ||||| ||  | ||||||||||  |||||||||||||||| |||||| |||    
T  26023513 catttgtattcga-cattgttactattagtggaagtccttggtggaggtgtttttcaccaagaagagtagacatagcccgaagcgaggacgaaaggatga 26023611  T
Q  205 actactat-aaaatctcggtgttgtt-tctcgtccctttcctctttaattttgctaattgt 263  Q
    |||||||| ||||||||||||| ||| |||  | ||||  ||||||||||||| |||||||    
T  26023612 actactataaaaatctcggtgtcgttctctttttccttatctctttaattttgataattgt 26023672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 137 - 376
Target Start/End: Original strand, 17984334 - 17984560
Alignment:
Q  137 aagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaactactataaaatctcggtgttgttt--ctcg 234  Q
    ||||||||||| |||| |||||| || | ||||||||| |||| |||||| |||||| |||||||  || ||||||||| |||| |||| |  |  |||     
T  17984334 aagtccttggtagagaggttttcaatcaagaagagtaggtgtatcccgaaacgaggacgaaaggggaaattactataaa-tctcagtgtcgaataactct 17984432  T
Q  235 tccctttcctctttaattttgctaattgtgtatatgcttgcttgataaattgttagaatagaaattgaacatgatcttgtttcaacttgttaaacttgac 334  Q
    | ||||||||||||||||||   |||||||||| |||||| |||||||||||||||||||| |||||||  ||||          |||||||||||||      
T  17984433 ttcctttcctctttaatttt---aattgtgtatgtgcttgtttgataaattgttagaatag-aattgaatgtgat----------cttgttaaacttggt 17984518  T
Q  335 ttaattcattgcattaggttttctcttaatctacattgatca 376  Q
    ||| ||||||| ||||||||||||||||||| ||||||||||    
T  17984519 ttatttcattgaattaggttttctcttaatccacattgatca 17984560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 216
Target Start/End: Complemental strand, 17335648 - 17335438
Alignment:
Q  7 gacatcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatca 106  Q
    |||||||||||||||||| |||||| | ||||| |||  |||||||||| || ||||  | || || | ||||| |||||| ||| || |||||||||||    
T  17335648 gacatcaagaagcaccaaattcaaacgttatttcaagtctgggggagtgcttacatagaagttgaagaactaggataatttcaagaaactcttgtaatca 17335549  T
Q  107 ca-ttgtaatcaaacattcata-ttctagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtga 204  Q
    || ||||| || ||||||  || |  ||||||| | | |||||||||  ||||| ||  | |||||||||| |||||   ||||||||| ||||||||||    
T  17335548 catttgtattc-aacattgttactgttagtggatgacattggtggaggtgtttttcaccaagaagagtagacgtagcttaaagcgaggacgaaagggtga 17335450  T
Q  205 actactataaaa 216  Q
    ||||||||||||    
T  17335449 actactataaaa 17335438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 39667079 - 39667178
Alignment:
Q  11 tcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatcacatt 110  Q
    |||||||||||||| |||||||||||||| ||| ||||||||||||||  ||||||  | || | | |||||| ||| |||||  |||||||||||||||    
T  39667079 tcaagaagcaccaaattcaaagggtatttgaagtttgggggagtggttagatatgaggtgaagaaccagggtagtttcaaggatctcttgtaatcacatt 39667178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 18371592 - 18371676
Alignment:
Q  131 tagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaactactataaa 215  Q
    ||||||||||||||| | ||||| ||||| |  | ||||| | || ||| ||||||||||||| ||||||| |||| ||||||||    
T  18371592 tagtggaagtccttgatagagacattttctaacaagaagaatggaggtaccccgaagcgaggacgaaagggggaaccactataaa 18371676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 23663065 - 23663013
Alignment:
Q  11 tcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcata 63  Q
    ||||| |||||||| |||||||| ||||| ||| ||||||||||| |||||||    
T  23663065 tcaaggagcaccaaattcaaaggttatttgaagtttgggggagtgtttgcata 23663013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 7 - 362
Target Start/End: Complemental strand, 29831331 - 29830976
Alignment:
Q  7 gacatcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatca 106  Q
    ||||| ||||||||||| ||||||||||||||| |||||| |||||||||||||||| ||||| || | ||| |||| ||| |||||||| || || |||    
T  29831331 gacataaagaagcaccagtttcaaagggtatttgaagattaggggagtggttgcataggaattgaagaactaaggtagtttcaaggaattattttagtca 29831232  T
Q  107 cattgtaatcaaacattcatattctagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaac 206  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| || ||||| | ||||||| || |||| |||||||||||||||||||||||||    
T  29831231 cattataatcaaacattcatattctagtggaagtccttggtggagacattctccatcaagaagagtggacgtagaccgaagcgaggaagaaagggtgaac 29831132  T
Q  207 tactataaaatctcggtgttgtttctcgtccctttcctctttaattttg-ctaattgtgtatatgcttgcttgataaattgttagaatagaaattgaaca 305  Q
    |||||| |||||||| | |  |||||| ||||| |||||||||||||||  ||||||||||||||||||||||||||||| |||   || ||||||        
T  29831131 tactat-aaatctcgatatcttttctcttccctatcctctttaattttgattaattgtgtatatgcttgcttgataaatttttatgttaaaaattgtgtg 29831033  T
Q  306 tgatcttgtttcaacttgttaaacttgacttaattcattgcattaggttttctctta 362  Q
    |||||| | || |  ||||||||||| ||||||||||||| |||||||||| |||||    
T  29831032 tgatctaggtttattttgttaaacttaacttaattcattgaattaggttttatctta 29830976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 7 - 286
Target Start/End: Complemental strand, 27736003 - 27735724
Alignment:
Q  7 gacatcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatca 106  Q
    ||||||||||||||||||||||||||| ||||| |||||| |||||||| ||||||||||||| || | |||||||| ||| ||| ||||||||||||||    
T  27736003 gacatcaagaagcaccaatttcaaaggttatttgaagattaggggagtgattgcatatgaattgaagaactagggtagtttcaagaaattcttgtaatca 27735904  T
Q  107 cattgtaatcaaacattcatattctagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaac 206  Q
    |||||||||||| ||||   ||||||||||||||||||||||||| |||||| ||| | |||| |||||  ||||| |||||||||| ||||| | ||||    
T  27735903 cattgtaatcaagcattatcattctagtggaagtccttggtggaggcgtttttcatcaagaagtgtagacatagcctgaagcgaggatgaaagagcgaac 27735804  T
Q  207 tactataaaatctcggtgttgtttctcgtccctttcctctttaattttg-ctaattgtgtatatgcttgcttgataaattg 286  Q
    |||||| |||||||| |||  | |||| || |  |||||||||||||||  ||||||||||| || || ||||||||||||    
T  27735803 tactat-aaatctcgatgtcttctctcttctccatcctctttaattttgattaattgtgtatttgatttcttgataaattg 27735724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 10 - 226
Target Start/End: Original strand, 22847202 - 22847417
Alignment:
Q  10 atcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatcacat 109  Q
    ||||||||||||| |||||||| ||| ||| ||||||||||||||| ||||||  ||||| || |  ||||||| ||| ||||||||||||||||||| |    
T  22847202 atcaagaagcaccgatttcaaaaggt-tttgaagattgggggagtgattgcattggaattgaagaattagggtagtttcaaggaattcttgtaatcactt 22847300  T
Q  110 tgtaatcaaacattca-tattctagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaacta 208  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||||| | ||||||| || |||||| |||||| ||| ||||||||||||||    
T  22847301 tgtaatcaaacattcaatattctagtggaagtccttggtggaggcgttttccatcaagaagagtggacgtagcctgaagcggggacgaaagggtgaacta 22847400  T
Q  209 ctataaaatctcggtgtt 226  Q
    |||  |||||||||||||    
T  22847401 cta-caaatctcggtgtt 22847417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 7 - 300
Target Start/End: Complemental strand, 23274265 - 23273973
Alignment:
Q  7 gacatcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatca 106  Q
    |||||||||||||| ||||||| || ||| ||| |||||| |||||||| ||||||| ||||| || | |||||||| ||| |||||||||||||| |||    
T  23274265 gacatcaagaagcatcaatttcgaaaggt-tttgaagatttggggagtgattgcataggaattgaagaactagggtagtttcaaggaattcttgtattca 23274167  T
Q  107 cattgtaatcaaacattcat-attctagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaa 205  Q
    |||||||||||||||||||| |||||| |||||||| ||||||||  | |||||||| | |||||||||| ||||||||||||||||| |||||| ||||    
T  23274166 cattgtaatcaaacattcattattctactggaagtctttggtggaatcattttccatcaagaagagtagacgtagcccgaagcgaggacgaaaggatgaa 23274067  T
Q  206 ctactataaaatctcggtgttgtttctcgtccctttcctctttaattttg-ctaattgtgtatatgcttgcttgataaattgttagaatagaaatt 300  Q
    ||||||| |||||| |||||| | |||| || || |||||| ||||| ||  ||||||||||| ||   ||||||||||||| |||  ||||||||    
T  23274066 ctactat-aaatcttggtgttctctctcttctctatcctctataattctgattaattgtgtatttg-aagcttgataaattgatagtgtagaaatt 23273973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 7 - 255
Target Start/End: Original strand, 16700968 - 16701215
Alignment:
Q  7 gacatcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatca 106  Q
    ||||||||||||| | ||||||||||||| ||| ||||||| ||||||  ||||||| | ||| || |  ||||||| ||| ||| |||| || ||||||    
T  16700968 gacatcaagaagcccaaatttcaaagggt-tttgaagattgagggagtaattgcataggcattgaagaaatagggtagtttcaagaaattattctaatca 16701066  T
Q  107 cattgtaatcaaacattca-tattctagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaa 205  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||  ||||| ||| | |||||||||| |||| || |||| |||| ||||| || ||    
T  16701067 cattgtaatcaaacattcaatattctagtgggagtccttggtggaggtgtttttcatcaagaagagtagacgtagaccaaagcaaggacgaaagagtaaa 16701166  T
Q  206 ctactataaaatctcggtgttgtttctcgtccctttcctctttaattttg 255  Q
    ||||||| |||||||| |||| | |||| || || |||||||||||||||    
T  16701167 ctactat-aaatctcgatgttttatctcttctctatcctctttaattttg 16701215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 7 - 216
Target Start/End: Original strand, 19527202 - 19527411
Alignment:
Q  7 gacatcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatca 106  Q
    ||||||||| |||||||| |||||||||||||| ||| |||||||||||||| |||| |  || || | ||||| || ||| |||||| ||| |||||||    
T  19527202 gacatcaaggagcaccaaattcaaagggtatttgaagtttgggggagtggttacata-gcgttgaagaactaggatagtttcaaggaactctcgtaatca 19527300  T
Q  107 catt-gtaatcaaacattcatattctag-tggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtga 204  Q
    |||| ||| |||| ||||  || | | | |||||||||||| ||||| |||||| ||  | |||||||||  ||||||||||||||| | ||||||||||    
T  19527301 catttgtattcaa-cattgttactattgatggaagtccttgatggaggcgtttttcaccaagaagagtaggcgtagcccgaagcgagaacgaaagggtga 19527399  T
Q  205 actactataaaa 216  Q
    ||||||||||||    
T  19527400 actactataaaa 19527411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 131 - 300
Target Start/End: Complemental strand, 25917006 - 25916836
Alignment:
Q  131 tagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaactacta-taaaatctcggtgttgtt 229  Q
    ||||||| | ||||||||||| |||||| ||  | |||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||| ||||| |||    
T  25917006 tagtggatgaccttggtggaggcgtttttcaccaagaagagtagacgtagcccgaagtgaggacgaaagggtgaactactattaaaatcttggtgtcgtt 25916907  T
Q  230 -tctcgtccctt-tcctctttaattttgctaattgtgtatatgcttgcttgataaattgttagaatagaaatt 300  Q
     |||  |||||| ||||||||||||||| || |  |||||||| ||  ||||| ||||| |||||||||||||    
T  25916906 ctcttttcccttatcctctttaattttgatagt--tgtatatgtttagttgattaattgatagaatagaaatt 25916836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 229
Target Start/End: Original strand, 20972293 - 20972435
Alignment:
Q  89 aaggaattcttgtaatcacattgtaatcaaacattcatattct-agtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaag 187  Q
    |||||| ||||||||||||||| | ||  ||||||  |||| | |||||| | |||||||||||   |||| ||  | |||||||||| |||||| ||||    
T  20972293 aaggaactcttgtaatcacatttttattcaacattgttattatcagtggatgaccttggtggaggtttttttcaccaagaagagtagacgtagcctgaag 20972392  T
Q  188 cgaggaagaaagggtgaactactat-aaaatctcggtgttgtt 229  Q
    ||||||  ||||||||||||||||| |||||||||||||||||    
T  20972393 cgaggacaaaagggtgaactactataaaaatctcggtgttgtt 20972435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 24660762 - 24660861
Alignment:
Q  11 tcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatcacatt 110  Q
    |||||||||||||| |||||||| ||||| ||| ||||||||||| || |||| || || || | ||||| || ||| |||||| |||||||||||||||    
T  24660762 tcaagaagcaccaaattcaaaggttatttgaagtttgggggagtgcttacataggagttgaagaactaggatagtttcaaggaactcttgtaatcacatt 24660861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 20057308 - 20057105
Alignment:
Q  13 aagaagcaccaatttcaaagggtatttaaagattgggggagtggtt-gcatatgaattaaatagctagggtaatttgaaggaattcttgtaatcaca--- 108  Q
    ||||| |||||||||||| ||||| || ||||||| |||  | ||| |||||| |||| || |  |||||||||| |||||| ||||||||||||||       
T  20057308 aagaaacaccaatttcaaggggtacttgaagattgagggttttgtttgcatataaattgaaaaattagggtaatt-gaaggagttcttgtaatcacaaca 20057210  T
Q  109 ttgtaatcaaacattcatattctagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaacta 208  Q
    |||||||||||  ||  |||| |||||||||||| || | |||||||| || || | ||||||| || ||| || ||||| |||| ||||||| |||| |    
T  20057209 ttgtaatcaaa--tttctattttagtggaagtccatgatagagacgttctctatcaagaagagtggaggtatcctgaagcaaggatgaaagggagaacca 20057112  T
Q  209 ctataaa 215  Q
    |||||||    
T  20057111 ctataaa 20057105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 131 - 302
Target Start/End: Original strand, 18958525 - 18958697
Alignment:
Q  131 tagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaactactat-aaaatctcggtgt-tgt 228  Q
    ||||| ||||||||||||||| |||||| ||  | ||| |||||| ||||| ||||| ||||| ||||| | ||| |||||| ||||||| ||||| | |    
T  18958525 tagtgtaagtccttggtggaggcgtttttcaccaagaaaagtagacgtagctcgaagtgaggacgaaagagagaaatactataaaaatctaggtgtcttt 18958624  T
Q  229 ttctcgtccctttcctctttaattttgctaattgtgtatatgctt-gcttgataaattgttagaatagaaattga 302  Q
     | || ||| | ||||||||||||||| ||||  |||||||||||   ||||| ||||| ||| |||||||||||    
T  18958625 atatcttccttatcctctttaattttgataat--tgtatatgcttaaattgattaattgataggatagaaattga 18958697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 24511226 - 24511123
Alignment:
Q  7 gacatcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatca 106  Q
    |||||||||||||||||| |||||| || |||| ||| ||  |||||||||| |||| |  || || | ||||| || ||| |||||| |||||||||||    
T  24511226 gacatcaagaagcaccaaattcaaaaggcatttgaagtttaagggagtggttacataggggttgaagaactaggatagtttaaaggaactcttgtaatca 24511127  T
Q  107 catt 110  Q
    ||||    
T  24511126 catt 24511123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 144; Significance: 1e-75; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 7 - 371
Target Start/End: Original strand, 25380245 - 25380598
Alignment:
Q  7 gacatcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatca 106  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||  |||| || || ||||||| ||||||||||| |||||         
T  25380245 gacatcaagaagcaccaatttcaaagggtatttgaagattgagggagtggttgcataataattgaagagttagggtagtttgaaggaatccttgt----- 25380339  T
Q  107 cattgtaatcaaacattcatattctagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaac 206  Q
          ||||||||||||| ||| ||||||||||||| | |||||| ||||||||  | |||||||||||||||||||||||||||| ||||||||||||    
T  25380340 ------aatcaaacattcacattttagtggaagtcctcgatggagatgttttccaccaagaagagtagatgtagcccgaagcgaggacgaaagggtgaac 25380433  T
Q  207 tactataaaatctcggtgttgtttctcgtccctttcctctttaattt-tgctaattgtgtatatgcttgcttgataaattgttagaatagaaattgaaca 305  Q
    |||| | |||| || |||| ||||||| | |  ||||||||||||||    || |||||||||| || | |||||||||||||| |||||||||||||      
T  25380434 tactgt-aaatttcagtgtcgtttctctttctattcctctttaatttcatttatttgtgtatattctagtttgataaattgttaaaatagaaattgaatt 25380532  T
Q  306 tgatcttgtttcaacttgttaaacttgacttaattcattgcattaggttttctcttaatctacatt 371  Q
    |||| |||||||| |||||||||||||||||||||| ||| |||||||||||| || |||||||||    
T  25380533 tgattttgtttcatcttgttaaacttgacttaattcgttgaattaggttttcttttcatctacatt 25380598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 7 - 285
Target Start/End: Complemental strand, 17317460 - 17317182
Alignment:
Q  7 gacatcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatca 106  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||| ||||| || | |||||||| ||| ||||||||||||||| ||    
T  17317460 gacatcaagaagcaccaatttcaaaggttatttgaagattgggggagtgattgcataggaattgaagaactagggtagtttcaaggaattcttgtaaaca 17317361  T
Q  107 cattgtaatcaaacattcatattctagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaac 206  Q
    |||| ||||||||||||   |||||| ||||||||||||||||||||||||||||| | ||||||| || ||||||||||||||||| ||||||| ||||    
T  17317360 cattttaatcaaacattatcattctattggaagtccttggtggagacgttttccatcaagaagagttgacgtagcccgaagcgaggacgaaagggcgaac 17317261  T
Q  207 tactataaaatctcggtgttgtttctcgtccctttcctctttaattttg-ctaattgtgtatatgcttgcttgataaatt 285  Q
    |||||| ||||||||||||  | |||| || || |||||||||||||||  ||||| ||||| || | ||||||||||||    
T  17317260 tactat-aaatctcggtgtcttctctcttctctatcctctttaattttgattaattatgtatttgatcgcttgataaatt 17317182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 9 - 255
Target Start/End: Complemental strand, 17199929 - 17199684
Alignment:
Q  9 catcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatcaca 108  Q
    |||||||||||| |||||||||| ||| ||| |||||||| |||||| ||||||| ||||| || | |||  ||| ||| ||||||||||||||||||||    
T  17199929 catcaagaagcatcaatttcaaaaggt-tttgaagattggcggagtgattgcataggaattgaagaactattgtagtttcaaggaattcttgtaatcaca 17199831  T
Q  109 ttgtaatcaaacattca-tattctagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaact 207  Q
    ||||||||||||||||| |||||||||||||||| ||||||||| | |||||||| | |||||||||||||||||||||||||||| |||||||||||||    
T  17199830 ttgtaatcaaacattcaatattctagtggaagtcgttggtggaggcattttccatcaagaagagtagatgtagcccgaagcgaggacgaaagggtgaact 17199731  T
Q  208 actataaaatctcggtgttgtttctcgtccctttcctctttaattttg 255  Q
    ||||| ||||||||||||| | |||| || || | |||||||||||||    
T  17199730 actat-aaatctcggtgttttctctcttctctattctctttaattttg 17199684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 7 - 215
Target Start/End: Complemental strand, 20405785 - 20405576
Alignment:
Q  7 gacatcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatca 106  Q
    ||||||| ||||||| ||||||||||| ||||| ||||||||||||||  ||||||| ||| | |  | ||| |||| ||| ||||||||||||||||||    
T  20405785 gacatcatgaagcacaaatttcaaaggttatttgaagattgggggagtaattgcataggaactgacgaactatggtagtttcaaggaattcttgtaatca 20405686  T
Q  107 cattgtaatcaaacattca-tattctagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaa 205  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||| | ||||||| |||||||| ||||||||||| ||||| |||||    
T  20405685 cattgtaatcaaacattcaatattctagttgaagtccttggtggagatgttttccatcaagaagagtggatgtagctcgaagcgaggacgaaagagtgaa 20405586  T
Q  206 ctactataaa 215  Q
    | ||| ||||    
T  20405585 ccactgtaaa 20405576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 7 - 267
Target Start/End: Complemental strand, 29984172 - 29983912
Alignment:
Q  7 gacatcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatca 106  Q
    ||||||||||||||||||||||||||  ||||| ||||||||||||||| ||||||| ||| | || |  ||||||| ||| ||||||||||||||||||    
T  29984172 gacatcaagaagcaccaatttcaaagcttatttgaagattgggggagtgattgcataggaactgaagaattagggtagtttcaaggaattcttgtaatca 29984073  T
Q  107 cattgtaatcaaacattcatattctagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaac 206  Q
    ||||||||| |||||||   |||||||||||||||||  ||||||| |||||||||   |||||||||| |||||||||||||| || ||||||| ||||    
T  29984072 cattgtaattaaacattatcattctagtggaagtcctctgtggagaggttttccatcgagaagagtagacgtagcccgaagcgatgatgaaagggcgaac 29983973  T
Q  207 tactataaaatctcggtgttgtttctcgtccctttcctctttaattttg-ctaattgtgtat 267  Q
     ||||| |||||| |||||  | |||| |  || |||||||||||||||  |||||||||||    
T  29983972 aactat-aaatcttggtgtcttctctcttttctatcctctttaattttgattaattgtgtat 29983912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 13 - 364
Target Start/End: Complemental strand, 23510844 - 23510495
Alignment:
Q  13 aagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatcaca---t 109  Q
    ||||| ||||||||||||||||||||| ||| ||||||||||| ||||||| || ||||| |  |||||||||| ||| || ||||||||||||||   |    
T  23510844 aagaaacaccaatttcaaagggtatttgaaggttgggggagtgattgcataagagttaaaaat-tagggtaatt-gaaagatttcttgtaatcacaacat 23510747  T
Q  110 tgtaatcaaacattcatattctagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaactac 209  Q
    |||||||| | ||||| ||| |||||||||||||||||||||||||||||||| | ||| |||| | ||| ||||||||||| || |||||| |||||||    
T  23510746 tgtaatcagaaattca-attttagtggaagtccttggtggagacgttttccatcaagaaaagtaaacgtaccccgaagcgag-aacaaagggggaactac 23510649  T
Q  210 tataaaatctcggtgttgtttctcgtccctttcctctttaattttgctaa--ttgtgtatatgcttgcttgataaattgttagaatagaaattgaacatg 307  Q
    ||||||   ||| ||  ||||||| |||||||||||||||||||   | |  ||| ||||||| ||| |||||  |||||||||| |  | |||||  ||    
T  23510648 tataaatattcg-tgccgtttctcttccctttcctctttaatttcatttattttgagtatatgtttgtttgat-gattgttagaa-atgatttgaatgtg 23510552  T
Q  308 atcttgtttcaacttgttaaacttgacttaattcattgcattaggttttctcttaat 364  Q
    ||||||||| |  |||||||||||||||||||| |||| |||||||||| |||||||    
T  23510551 atcttgttttattttgttaaacttgacttaatttattgaattaggttttttcttaat 23510495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 7 - 199
Target Start/End: Original strand, 15546197 - 15546387
Alignment:
Q  7 gacatcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatca 106  Q
    |||||||| ||||||| |||||||||| ||||| ||| |||||  |||| ||||||| ||||| || | |  ||||| ||| ||||||||||||||||||    
T  15546197 gacatcaataagcaccgatttcaaaggttatttgaagcttggga-agtgattgcataggaattgaagaac--gggtagtttcaaggaattcttgtaatca 15546293  T
Q  107 cattgtaatcaaacattcat-attctagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaag 199  Q
    | |||||||||||||||||| ||||||||||||||| ||||||||||||| |||||| | ||||||| ||||||||  |||||||||| |||||    
T  15546294 cgttgtaatcaaacattcattattctagtggaagtctttggtggagacgtattccatcaagaagagtggatgtagcttgaagcgaggacgaaag 15546387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 18577120 - 18576885
Alignment:
Q  13 aagaagcaccaatttcaaagggtatttaaagattggggg-agtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatc---aca 108  Q
    ||||| ||||||||||||| |||||||  |||| |||||  || |||||||| ||||| || |  |||| ||| |||||||| |||||||||||   |||    
T  18577120 aagaaacaccaatttcaaatggtatttgtagatcgggggttgtagttgcataggaattgaa-aattaggataa-ttgaaggagttcttgtaatcacaaca 18577023  T
Q  109 ttgtaatcaaacattcatattctagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaacta 208  Q
    ||||||||||||||||| ||| |||||||||||||| || ||||||||||| |  | |||||||||| ||| |||||  |||||| ||||||| ||||||    
T  18577022 ttgtaatcaaacattca-attttagtggaagtcctttgtagagacgttttctaccaagaagagtagacgtaccccgatacgaggacgaaagggggaacta 18576924  T
Q  209 ctataaaatctcggtgttgtttctcgtccctttcctcttt 248  Q
    |||| ||||||| |||| ||||||| ||||||||||||||    
T  18576923 ctat-aaatctcagtgtcgtttctcttccctttcctcttt 18576885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 357
Target Start/End: Complemental strand, 13332954 - 13332610
Alignment:
Q  13 aagaagcaccaatttcaaagggtatttaaagattgggggag-tggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatcaca--- 108  Q
    ||||| ||||||||||||||||||||| |||||||||||   ||| |||||||||||| || |  || ||||||||  |||  ||||||||||||||       
T  13332954 aagaaacaccaatttcaaagggtatttgaagattgggggctatggctgcatatgaattgaaaat-taaggtaattt--aggt-ttcttgtaatcacaaca 13332859  T
Q  109 ttgtaatcaaacattcatattctagtggaagtccttggtggagacg-ttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaact 207  Q
    ||||||| ||||||||| |||||||||||||||||| || |||||| ||||  |  | |||||| ||| ||| |||||||| |||| |||||||  ||||    
T  13332858 ttgtaattaaacattca-attctagtggaagtccttagtagagacgtttttttaacaagaagaggagacgtaccccgaagcaaggatgaaaggggaaact 13332760  T
Q  208 actataaaatctcggtgttgtttctcgtccctttcctctttaattttgct--aattgtgtatatgcttgcttgataaattgttagaatagaaattgaaca 305  Q
    ||||| |||||||| ||| |||| || |||||||||||||| | |||| |  | ||| ||||||| ||| ||||| | |  ||||||| | | |||||      
T  13332759 actat-aaatctcgttgtcgtttatcttccctttcctcttttactttgtttgatttgagtatatgattgtttgattattgtttagaattg-atttgaatg 13332662  T
Q  306 tgatcttgtttcaacttgttaaacttgacttaattcattgcattaggttttc 357  Q
    || ||| ||||||||||||||||||||| ||||||| ||| ||||| |||||    
T  13332661 tggtctagtttcaacttgttaaacttgaattaattccttgaattagcttttc 13332610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 166 - 302
Target Start/End: Complemental strand, 22507365 - 22507228
Alignment:
Q  166 gaagagtagatgtagcccgaagcgaggaagaaagggtgaactactat-aaaatctcggtgttgtt-tctcgtccctt-tcctctttaattttgctaattg 262  Q
    |||| ||||||||||||||||||||||| ||||||||||||||| || ||||||||||||| ||| |||  |||||| ||||||| || |||| || |      
T  22507365 gaagggtagatgtagcccgaagcgaggacgaaagggtgaactacaataaaaatctcggtgtcgttctcttttcccttatcctcttcaagtttgatagt-- 22507268  T
Q  263 tgtatatgcttgcttgataaattgttagaatagaaattga 302  Q
    |||||||| ||  ||||||||||| |||||||||||||||    
T  22507267 tgtatatgtttaattgataaattgatagaatagaaattga 22507228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 13 - 125
Target Start/End: Complemental strand, 24592295 - 24592182
Alignment:
Q  13 aagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatc---acat 109  Q
    ||||| ||||||||||||||||||||| |||||||||||||||  ||||||||||||||| |  |||||| | |||||||| ||||| |||||   ||||    
T  24592295 aagaaacaccaatttcaaagggtatttgaagattgggggagtgactgcatatgaattaaa-aattagggt-agttgaaggagttcttataatcacaacat 24592198  T
Q  110 tgtaatcaaacattca 125  Q
    ||||||||| ||||||    
T  24592197 tgtaatcaatcattca 24592182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 22045541 - 22045644
Alignment:
Q  7 gacatcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatca 106  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||| || |||| |  || || | ||||| || ||| |||||| ||| |||||||    
T  22045541 gacatcaagaagcaccaaattcaaaggttatttaaagattgggggagtgtttacataggggttgaagaactaggatagttttaaggaactctagtaatca 22045640  T
Q  107 catt 110  Q
    ||||    
T  22045641 catt 22045644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 216
Target Start/End: Complemental strand, 18935067 - 18934857
Alignment:
Q  7 gacatcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatca 106  Q
    |||||| ||||||||||| |||||||| ||||| ||| ||||||||||| || |||  |  || || |  |||| || ||| |||||| |||||||||||    
T  18935067 gacatcgagaagcaccaaattcaaaggttatttgaagtttgggggagtgcttacatgggggttgaagaagtaggatagtttcaaggaactcttgtaatca 18934968  T
Q  107 cattgtaatcaaacattcatattct-agtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaa 205  Q
    ||||   ||  ||||||  || | | |||||| | ||||| ||||| |||||| ||  | ||| |||||| ||||||||||||| ||| |||||||||||    
T  18934967 catttctattcaacattgttactattagtggatgaccttgctggaggcgtttttcaccaagaacagtagacgtagcccgaagcggggatgaaagggtgaa 18934868  T
Q  206 ctactataaaa 216  Q
    |||||||||||    
T  18934867 ctactataaaa 18934857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 306 - 383
Target Start/End: Complemental strand, 18576837 - 18576760
Alignment:
Q  306 tgatcttgtttcaacttgttaaacttgacttaattcattgcattaggttttctcttaatctacattgatcacagttga 383  Q
    |||||| ||||||| |||| || ||||||||||||| ||| |||||||| |||||||||| | |||||||||| ||||    
T  18576837 tgatctagtttcaatttgtcaaccttgacttaattctttgaattaggttatctcttaatccatattgatcacatttga 18576760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 25221074 - 25221173
Alignment:
Q  11 tcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatcacatt 110  Q
    |||||||||||||| |||||||  ||||| ||| ||||||||||  || |||| || || || | ||||| || ||| |||||| |||||||||||||||    
T  25221074 tcaagaagcaccaaattcaaagattatttgaagtttgggggagtccttacataggagttgaagaactaggatagtttaaaggaactcttgtaatcacatt 25221173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 255
Target Start/End: Original strand, 17774380 - 17774485
Alignment:
Q  149 gagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaactactataaaatctcggtgttgtttctcgtccctttcctcttt 248  Q
    ||||||| ||| || | |||||||||| ||  ||||||||||||| ||||| |  ||||| ||||||||   ||||||| ||||| || |||||||||||    
T  17774380 gagacgtattctatcacgaagagtagacgtgccccgaagcgaggacgaaagaggaaactattataaaattatggtgttg-ttctcttctctttcctcttt 17774478  T
Q  249 aattttg 255  Q
    |||||||    
T  17774479 aattttg 17774485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 19957474 - 19957422
Alignment:
Q  11 tcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcata 63  Q
    ||||| |||||||| |||||||| ||||| ||| ||||||||||| |||||||    
T  19957474 tcaaggagcaccaaattcaaaggttatttgaagtttgggggagtgtttgcata 19957422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 133; Significance: 5e-69; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 7 - 282
Target Start/End: Complemental strand, 26264 - 25992
Alignment:
Q  7 gacatcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatca 106  Q
    |||||||||||||||| |||||||||| ||||| |||||||| |||||| ||||||| ||||  || | |||||||| ||| ||||| |||| |||||||    
T  26264 gacatcaagaagcaccgatttcaaaggttatttgaagattggtggagtgattgcataagaatggaagaactagggtagtttcaaggagttctagtaatca 26165  T
Q  107 cattgtaatcaaacattcatattctagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||| ||||||||||||||||| ||||||| ||||    
T  26164 cattgtaatcaaacattcatattctagtggaagtccttggtggagacattttccatcaagaagagtagacgtagcccgaagcgaggacgaaagggcgaac 26065  T
Q  207 tactataaaatctcggtgttgtttctcgtccctttcctctttaattttgctaattgtgtatatgcttgcttgataa 282  Q
     ||||| ||||||| ||||  |||||| || || |||||||||||  |  ||||||||||| || |||||||||||    
T  26064 cactat-aaatctcagtgtcttttctcttctctatcctctttaatgat--taattgtgtatttgattgcttgataa 25992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 7 - 362
Target Start/End: Complemental strand, 42369086 - 42368734
Alignment:
Q  7 gacatcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatca 106  Q
    |||| |||||||||| || |||||||||||||| ||| ||||||||||| ||  ||| |  || || | ||||||||  || |||||| |||||||||||    
T  42369086 gacaacaagaagcacaaaattcaaagggtatttgaagtttgggggagtgtttatataagggttgaagaactagggtagcttcaaggaactcttgtaatca 42368987  T
Q  107 cattgtaatcaaacattcatattctagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaac 206  Q
    |||||||||  |||||||||||| ||||| |||||||||| ||||  ||||||||  | |||||||||||||| |||||||||||||  |||||||||||    
T  42368986 cattgtaattcaacattcatattttagtgaaagtccttggcggaggagttttccaccaagaagagtagatgtatcccgaagcgaggacaaaagggtgaac 42368887  T
Q  207 tactataaaatctcggtgttgtttctcgtccctttcctctttaattttgctaattgtgtatatgcttgcttgataaattgttagaatagaaattgaacat 306  Q
    |||||| ||||||  || | ||||||| ||| | ||||||||||||||| ||||  ||||||||  |  ||||| ||||| | ||||||||||||||  |    
T  42368886 tactat-aaatctttgtatcgtttctcttccttatcctctttaattttgataat--tgtatatgtataattgattaattgatggaatagaaattgaatgt 42368790  T
Q  307 gatcttgtttcaacttgttaaacttgacttaattcattgcattaggttttctctta 362  Q
    ||||  | |  |  ||||||||||||||||||||| ||| ||||||||||||||||    
T  42368789 gatcgagatcaattttgttaaacttgacttaattccttgaattaggttttctctta 42368734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 7 - 263
Target Start/End: Original strand, 24507788 - 24508048
Alignment:
Q  7 gacatcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatca 106  Q
    |||||||||||||||||| |||||||||||||| ||| ||| |||||||||| |||| |  || || | | ||| || ||| |||||| |||||||||||    
T  24507788 gacatcaagaagcaccaaattcaaagggtatttgaagtttgagggagtggttacataggggttgaagaaccaggatagttttaaggaactcttgtaatca 24507887  T
Q  107 catt-gtaatcaaacattcatattct-agtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtga 204  Q
    |||| |||||  ||||||  || | | |||||||||||||||||||   ||||| ||| | |||| ||||| |||||||||| |||||| ||||||| ||    
T  24507888 catttgtaattcaacattgttactattagtggaagtccttggtggaagtgtttttcatcaagaagtgtagacgtagcccgaaacgaggacgaaagggcga 24507987  T
Q  205 actactat-aaaatctcggtgttgtt-tctcgtccctttcctctttaattttgctaattgt 263  Q
    |||||||| ||||||||||||||||| | |  ||| | ||||||||||||||| |||||||    
T  24507988 actactataaaaatctcggtgttgttctattttccttatcctctttaattttgataattgt 24508048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 7 - 263
Target Start/End: Original strand, 25922003 - 25922262
Alignment:
Q  7 gacatcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatca 106  Q
    |||||||||||||||||| |||||||| ||||| ||| ||| ||||||||||  ||| |  || || | ||||  || ||| |||||| |||||||||||    
T  25922003 gacatcaagaagcaccaaattcaaaggttatttgaagtttgagggagtggttttataggggttgaagaactagaatagtttcaaggaactcttgtaatca 25922102  T
Q  107 catt-gtaatcaaacattcatattct-agtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtga 204  Q
    |||| ||| |||| ||||  || | | |||||||||||||||||||| |||||| ||  | |||||||||| |||||||||||||||||  |||||||||    
T  25922103 catttgtattcaa-cattgttactattagtggaagtccttggtggaggcgttttacaccaagaagagtagacgtagcccgaagcgaggacaaaagggtga 25922201  T
Q  205 actactataaaatctcggtgttgtt-tctcgtccctt-tcctctttaattttgctaattgt 263  Q
    ||| ||||||||||||||||  ||| |||  |||||| ||||||||||||||| |||||||    
T  25922202 actgctataaaatctcggtgccgttctcttttcccttatcctctttaattttgataattgt 25922262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 7 - 254
Target Start/End: Complemental strand, 14889549 - 14889303
Alignment:
Q  7 gacatcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatca 106  Q
    ||||||||||||||||||||| | |||||| || ||||||  || |||| ||||||| ||||| || | ||| |||| ||| ||||||||||||||||||    
T  14889549 gacatcaagaagcaccaattttagagggtagttgaagattatgg-agtgattgcataggaattgaagaactaaggtagtttcaaggaattcttgtaatca 14889451  T
Q  107 cattgtaatcaaacattc-atattctagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaa 205  Q
    | ||||| |||||||||| |||||||| | ||||| ||| ||||||  ||||||||| | ||||||| || ||||| ||||||||||| ||||  |||||    
T  14889450 cgttgtattcaaacattctatattctattagaagttcttagtggaggtgttttccatcaagaagagtggaggtagctcgaagcgaggacgaaatagtgaa 14889351  T
Q  206 ctactataaaatctcggtgttgtttctcgtccctttcctctttaatttt 254  Q
    | | ||| ||||||||||||  | |||| || || |||| |||||||||    
T  14889350 ccattat-aaatctcggtgtcttctctcttctctatcctttttaatttt 14889303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 7 - 158
Target Start/End: Complemental strand, 24697969 - 24697816
Alignment:
Q  7 gacatcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatca 106  Q
    |||||||||||||||||| |||||||||||||| ||| |||||||||||||| |||| |  || || | |||||||| ||| |||||| |||||||||||    
T  24697969 gacatcaagaagcaccaaattcaaagggtatttgaagtttgggggagtggttacataggggttgaagaactagggtagtttcaaggaactcttgtaatca 24697870  T
Q  107 ca-ttgtaatcaaacattcata-ttctagtggaagtccttggtggagacgtttt 158  Q
    || |||||||  ||||||  || |  ||||||||||||||||||||||||||||    
T  24697869 catttgtaattcaacattgttactattagtggaagtccttggtggagacgtttt 24697816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 167 - 225
Target Start/End: Original strand, 16974172 - 16974231
Alignment:
Q  167 aagagtagatgtagcccgaagcgaggaagaaagggtgaactactat-aaaatctcggtgt 225  Q
    |||||||||||||||||||||| |||| |||||||||||||| ||| |||||||||||||    
T  16974172 aagagtagatgtagcccgaagcaaggacgaaagggtgaactaatataaaaatctcggtgt 16974231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 131 - 226
Target Start/End: Original strand, 26883597 - 26883691
Alignment:
Q  131 tagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaactactataaaatctcggtgtt 226  Q
    ||||||||||||| | | || |||||||| || | |||||||||| ||| ||||||||||||| |||||||  |||||||||||||| | ||||||    
T  26883597 tagtggaagtcctcgatagatacgttttctatcaagaagagtagacgtaccccgaagcgaggacgaaaggg-aaactactataaaattttggtgtt 26883691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 131 - 216
Target Start/End: Complemental strand, 1343526 - 1343441
Alignment:
Q  131 tagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaactactataaaa 216  Q
    |||||||||||||||||||||  ||||| ||  | ||||||||||||| || | |||||||||  |||| | ||||||||||||||    
T  1343526 tagtggaagtccttggtggaggtgtttttcaccaagaagagtagatgtggctcaaagcgaggacaaaagagcgaactactataaaa 1343441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 13885773 - 13885825
Alignment:
Q  11 tcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcata 63  Q
    ||||| |||||||| |||||||| ||||| ||| ||||||||||| |||||||    
T  13885773 tcaaggagcaccaaattcaaaggttatttgaagtttgggggagtgtttgcata 13885825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 7 - 199
Target Start/End: Original strand, 6354 - 6547
Alignment:
Q  7 gacatcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatca 106  Q
    ||||||||||| ||||||||||||||| |||||||| ||||||| |||| ||||||| ||||| || | |||||||| ||  ||||||||||||||||||    
T  6354 gacatcaagaaacaccaatttcaaaggttatttaaatattggggtagtgattgcataggaattgaagaactagggtagttccaaggaattcttgtaatca 6453  T
Q  107 cattgtaatcaaacattca-tattctagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaag 199  Q
    ||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||| | ||||||| || ||||| ||||| ||||| |||||    
T  6454 cattgtaataaaacattcattattctagtggaagttcttggtggagacgttttccatcaagaagagtggaggtagctcgaagtgaggacgaaag 6547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 4e-48; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 7 - 199
Target Start/End: Complemental strand, 16647977 - 16647784
Alignment:
Q  7 gacatcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatca 106  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||| ||||| || | || || || ||| |||||||| |||||||||    
T  16647977 gacatcaagaagcaccaatttcaaaggttatttgaagattgggggagtgattgcataggaattgaagaactgggctagtttcaaggaatttttgtaatca 16647878  T
Q  107 cattgtaatcaaacattc-atattctagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaag 199  Q
    ||||||| |||||||||| ||||| || |||||||||||||||||||| |||||||| | ||||||| || ||||| ||||||||||| |||||    
T  16647877 cattgtattcaaacattcaatattttattggaagtccttggtggagacattttccatcaagaagagtggaggtagctcgaagcgaggacgaaag 16647784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 110 - 355
Target Start/End: Complemental strand, 24374835 - 24374589
Alignment:
Q  110 tgtaatcaaacattcatattctagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaactac 209  Q
    |||||||| ||||||| ||| ||||||||||||||||||| |||||||| ||  |  ||||||||| ||| ||||||| ||||| ||||||| |||||||    
T  24374835 tgtaatcatacattca-attttagtggaagtccttggtggtgacgtttttcaccaaaaagagtagacgtaccccgaagggaggacgaaagggagaactac 24374737  T
Q  210 tataaaatctcggtgttgtttctcgtccctttcctctttaattt--tgctaattgtgtatatgcttgcttgataaattgttagaatagaaattgaacatg 307  Q
    |||||||||||||||| |||||||  ||||||||||||||||||  |   | ||||||| ||||||| ||||||| |  ||||||| | |||||||  ||    
T  24374736 tataaaatctcggtgtcgtttctctcccctttcctctttaatttcatataatttgtgtaaatgcttgtttgataattgattagaattg-aattgaatgtg 24374638  T
Q  308 atcttgtttcaac-ttgttaaacttgacttaattcattgcattaggttt 355  Q
    || || ||||||| ||| ||| ||||||||||||  ||| |||||||||    
T  24374637 atattatttcaactttgataaccttgacttaattatttgaattaggttt 24374589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 175
Target Start/End: Original strand, 22741620 - 22741782
Alignment:
Q  13 aagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaatt--aaatagctagggtaatttgaaggaattcttgtaatc---ac 107  Q
    ||||| ||||||||||||||||||||| ||||||||||   |||||||||  |||||  |||||   ||||||| |||||| | || ||||||||   ||    
T  22741620 aagaaacaccaatttcaaagggtatttgaagattggggttatggttgcatgggaattgaaaata---agggtaa-ttgaagaagttattgtaatcacaac 22741715  T
Q  108 attgtaatcaaacattcatattctagtggaagtccttggtggagacgttttccataatgaagagtaga 175  Q
    |||||||||||||||||| ||| |||||||||| |||| | | ||||||||| || | ||||||||||    
T  22741716 attgtaatcaaacattca-attttagtggaagttcttgatagcgacgttttctatcaagaagagtaga 22741782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 216
Target Start/End: Complemental strand, 17125308 - 17125222
Alignment:
Q  130 ctagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaactactataaaa 216  Q
    |||||||| | ||||| ||||| |||||| ||  ||||||||| ||  |||||||||||||||| |||||||||||| ||| |||||    
T  17125308 ctagtggatgaccttgatggaggcgtttttcaccatgaagagttgacatagcccgaagcgaggacgaaagggtgaacaactttaaaa 17125222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0561 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0561
Description:

Target: scaffold0561; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 7 - 255
Target Start/End: Original strand, 598 - 844
Alignment:
Q  7 gacatcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatca 106  Q
    ||||||||||||||| ||||||||| |||  || |||||| |||||||| ||||||| ||| | || | ||| |||| ||| ||||||||||||||||||    
T  598 gacatcaagaagcacgaatttcaaaaggt--ttgaagattcggggagtgattgcataggaactgaagaactaaggtagtttcaaggaattcttgtaatca 695  T
Q  107 cattgtaatcaaacattca-tattctagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaa 205  Q
    ||  ||||||||||||||| |||||||||||||||||||||||||  |||||||||| | |||||||||| ||||| |||||  |||| | |||||||||    
T  696 cacggtaatcaaacattcaatattctagtggaagtccttggtggatgcgttttccatcaagaagagtagacgtagctcgaagtaaggacggaagggtgaa 795  T
Q  206 ctactataaaatctcggtgttgtttctcgtccctttcctctttaattttg 255  Q
    ||||||| |||||| |||||| | |||| ||  | |||||||||||||||    
T  796 ctactat-aaatcttggtgttttctctcttctttatcctctttaattttg 844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 94; Significance: 9e-46; HSPs: 2)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 7 - 255
Target Start/End: Complemental strand, 35290 - 35043
Alignment:
Q  7 gacatcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatca 106  Q
    |||||||| ||||| | |||||||| ||| ||| ||||||||||||||| ||  ||| ||||| || | |||||||| ||| |||| |||||||||||||    
T  35290 gacatcaaaaagcatcgatttcaaaaggt-tttgaagattgggggagtgattagataggaattgaagaactagggtagtttcaagggattcttgtaatca 35192  T
Q  107 cattgtaatcaaacattca-tattctagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaa 205  Q
    ||||  ||||||||||| | ||||||| |||||||||||||||||| | |||||||| | || ||||||| |||||||||||| |||| || ||||||||    
T  35191 cattcaaatcaaacatttaatattctaatggaagtccttggtggaggcattttccatcaggaggagtagacgtagcccgaagcaaggatgacagggtgaa 35092  T
Q  206 ctactataaaatctcggtgttgtttctcgtccctttcctctttaattttg 255  Q
    ||||||| ||||||||||||| | |||| || || |||||||||||||||    
T  35091 ctactat-aaatctcggtgttttctctcttctctatcctctttaattttg 35043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 7 - 267
Target Start/End: Complemental strand, 39605 - 39345
Alignment:
Q  7 gacatcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatca 106  Q
    |||||||| ||| |||||||||| ||| ||||| ||||||| ||||||| ||||||| ||||| || |  ||||||  ||| |||||||| ||||| |||    
T  39605 gacatcaaaaagtaccaatttcagaggttatttgaagattgagggagtgattgcataggaattgaagaaatagggttgtttcaaggaattattgtattca 39506  T
Q  107 cattgtaatcaaacattcatattctagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaac 206  Q
    |||||||| |||||||| |||| ||||||||||||| | ||||||| |||||||||   |||||||||||||||||||||| || ||  |||||||||||    
T  39505 cattgtaagcaaacattaatatcctagtggaagtccctcgtggagatgttttccatctagaagagtagatgtagcccgaagagaagacaaaagggtgaac 39406  T
Q  207 tactataaaatctcggtgttgtttctcgtccctttcctctttaattttg-ctaattgtgtat 267  Q
    |||||| |||||||| |||  | |||| || || |||||||||||||||  |||||||||||    
T  39405 tactat-aaatctcgatgtcttctctcttctctatcctctttaattttgattaattgtgtat 39345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 89 - 215
Target Start/End: Original strand, 25930948 - 25931074
Alignment:
Q  89 aaggaattcttgtaatcacattgtaatcaaacattcatattctagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagc 188  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| | |||||||| | |||||||||| |||| |||||||    
T  25930948 aaggaattcttgtaattacactgtaatcaaacattcatattctagtggaagtccttggtggagtcattttccatcaagaagagtagacgtaggccgaagc 25931047  T
Q  189 gaggaagaaagggtgaactactataaa 215  Q
     |||| ||||||| |||||||||||||    
T  25931048 aaggacgaaagggcgaactactataaa 25931074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 16598661 - 16598793
Alignment:
Q  22 caatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatcacattgtaatcaaaca 121  Q
    |||||||||||| ||||| ||||||||||||||| ||||||| ||||| || | |||||||  ||| ||||||||| |||||||||| ||||||||||||    
T  16598661 caatttcaaaggttatttgaagattgggggagtgattgcataggaattgaagaactagggtcgtttcaaggaattcatgtaatcacagtgtaatcaaaca 16598760  T
Q  122 ttcatattctagtggaagtccttggtggagacg 154  Q
    || ||||||||||||||||||||||||||||||    
T  16598761 ttaatattctagtggaagtccttggtggagacg 16598793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 110 - 267
Target Start/End: Complemental strand, 24454572 - 24454415
Alignment:
Q  110 tgtaatcaaacattcatattctagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaactac 209  Q
    |||||||||||||||  ||||||||||| ||||||||||||| | |||| ||| | |||||||||| |||||||||||||| || |||||||||||||||    
T  24454572 tgtaatcaaacattcgaattctagtggatgtccttggtggaggcattttgcatcaagaagagtagacgtagcccgaagcgaagacgaaagggtgaactac 24454473  T
Q  210 tataaaatctcggtgttgtttctcgtccctttcctctttaattttg-ctaattgtgtat 267  Q
    ||| ||||||||||||| | |||| || || |||||||||||||||  |||||||||||    
T  24454472 tat-aaatctcggtgttctctctcttctctatcctctttaattttgattaattgtgtat 24454415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 14 - 233
Target Start/End: Complemental strand, 22728287 - 22728069
Alignment:
Q  14 agaagcaccaatttcaaagggtatttaaagattggggga-gtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatcaca---t 109  Q
    |||| ||||||||||||||| || || || ||||||||  ||||||||||||||||| || |  |||||||||| |||||| ||||||||||||||   |    
T  22728287 agaatcaccaatttcaaaggttacttgaaaattgggggttgtggttgcatatgaattgaaaat-tagggtaatt-gaaggagttcttgtaatcacaacat 22728190  T
Q  110 tgtaatcaaacattcatattctagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaactac 209  Q
    ||||||||||  |||| ||| ||||| ||||| ||| | ||||| ||||| || | |||||||||||||| |||||||||| || ||||||| || ||||    
T  22728189 tgtaatcaaat-ttca-attttagtgaaagtctttgatagagaccttttctatcaagaagagtagatgtaccccgaagcgaagaggaaagggggagctac 22728092  T
Q  210 tataaaatctcggtgttgtttctc 233  Q
    ||| |||||||| |||||||||||    
T  22728091 tat-aaatctcgatgttgtttctc 22728069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 240
Target Start/End: Complemental strand, 24005567 - 24005341
Alignment:
Q  13 aagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggtaatttgaaggaattcttgtaatcaca---t 109  Q
    ||||| |||||||||||| ||||| || |||||| ||| | |||||||||| ||||| || |  | || ||||| |||||| ||||||||||||||   |    
T  24005567 aagaaacaccaatttcaaggggtacttgaagatttgggtaatggttgcataggaattgaaaattt-ggataatt-gaaggagttcttgtaatcacaaaat 24005470  T
Q  110 tgtaatcaaacattcatattctagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaactac 209  Q
    |||||||||||||||| ||| |||||||||||||||   |||||||||||  | | ||||||| |||||| | | |||| |||| || |||| |||| ||    
T  24005469 tgtaatcaaacattca-attttagtggaagtccttgaaagagacgttttctgtcaagaagagtggatgtatcgcaaagcaaggacgagagggagaaccac 24005371  T
Q  210 tataaaatctcggtgttgtttctcgtccctt 240  Q
    ||| |||| | ||||| ||||||| ||||||    
T  24005370 tat-aaattttggtgtcgtttctcttccctt 24005341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 25929619 - 25929695
Alignment:
Q  7 gacatcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaattaaatagctagggta 83  Q
    |||||||||||||| | | |||||||||||||| || |||||||||||| ||||||||||||| || | ||||||||    
T  25929619 gacatcaagaagcatcgagttcaaagggtatttgaaaattgggggagtgattgcatatgaattgaagaactagggta 25929695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 106 - 245
Target Start/End: Original strand, 14881609 - 14881746
Alignment:
Q  106 acattgtaatcaaacattcatattctagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaa 205  Q
    |||||||||||||||||| | ||| ||||| ||||||||| | || || ||||| || | |||||||||| |||  ||||| | |||| ||||||| | |    
T  14881609 acattgtaatcaaacattta-attttagtgaaagtccttgatagatacattttctatcaagaagagtagacgtactccgaaacaaggatgaaagggggca 14881707  T
Q  206 ctactataaaatctcggtgttgtttctcgtccctttcctc 245  Q
    ||||||| || |||||||||  |||||| |||||||||||    
T  14881708 ctactat-aattctcggtgtcatttctcttccctttcctc 14881746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 14881814 - 14881859
Alignment:
Q  313 gtttcaacttgttaaacttgacttaattcattgcattaggttttct 358  Q
    ||||||| ||||||  ||||||||||||||||| ||||||||||||    
T  14881814 gtttcaatttgttacccttgacttaattcattgaattaggttttct 14881859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 263
Target Start/End: Complemental strand, 9337996 - 9337916
Alignment:
Q  185 aagcgaggaagaaagggtgaactactat-aaaatctcggtgtt-gtttctcgtccctttcctctttaattttgctaattgt 263  Q
    |||||| || |||||||| ||||||||| ||||||||||||||  |||||| ||| | |||| |||||||||| |||||||    
T  9337996 aagcgacgacgaaagggtaaactactataaaaatctcggtgttattttctcttccttatcctttttaattttgataattgt 9337916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 109 - 255
Target Start/End: Original strand, 70668 - 70814
Alignment:
Q  109 ttgtaatcaaacattca-tattctagtggaagtccttggtggagacgttttccataatgaagagtagatgtagcccgaagcgaggaagaaagggtgaact 207  Q
    |||||| |||||||||| |||||||||||||||||||||||||| |||||||| | | |||||||| | ||||||||| | ||||| |||||||||||||    
T  70668 ttgtaagcaaacattcaatattctagtggaagtccttggtggaggcgttttccttcaagaagagtatacgtagcccgaggtgaggacgaaagggtgaact 70767  T
Q  208 actataaaatctcggtgttgtttctcgtccctttcctctttaattttg 255  Q
    ||||| ||||||||||||| | |||| |  ||  ||||||||||||||    
T  70768 actat-aaatctcggtgttttctctcttgtctagcctctttaattttg 70814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 70578 - 70639
Alignment:
Q  7 gacatcaagaagcaccaatttcaaagggtatttaaagattgggggagtggttgcatatgaatt 69  Q
    |||||||||||||| |||||| ||| ||| ||| ||||||||||||||| ||||||| |||||    
T  70578 gacatcaagaagcatcaattttaaaaggt-tttgaagattgggggagtgattgcataggaatt 70639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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