View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_676 (Length: 222)
Name: NF10145A_low_676
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_676 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 28 - 213
Target Start/End: Complemental strand, 77833 - 77648
Alignment:
| Q |
28 |
tttacaaccctaactaaactcaaacaattgtaagtgtaaccatacttgtggtaaggagttgagggagaagctattatttcattannnnnnnnnnnnggag |
127 |
Q |
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| T |
77833 |
tttacgaccctcactaaactcaaacaattgtaagtgtaaccatacttgtggtaaggagttgagggagaagctattatttcattatttattttttttggag |
77734 |
T |
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| Q |
128 |
tactataattcatattttcatatatgacttctgccacttttattttatatactatatgaaaatggtccttctttgtatttaggtat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
77733 |
tactataattcatattttcatatatgacttctgccacttttattttatatactatatgaaaatggtccttctttgtatttaggtat |
77648 |
T |
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