View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_679 (Length: 222)
Name: NF10145A_low_679
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_679 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 40163314 - 40163535
Alignment:
| Q |
1 |
aatctgccttgcatattattgttttttaactataaaacgtagaatgatatgaaataaaaaagaagaataagttaatgggcaacaacaacatatagcccta |
100 |
Q |
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| T |
40163314 |
aatctgccttgcatattattgttttttaactataaaacgtagaatgatatgaaataaaaaagaagaataagttaatgggcaacaacaacatatagcccta |
40163413 |
T |
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| Q |
101 |
atgacaagcaattaatttctgtttatcaggaatacttacagcatataaggcttccaatttggagttgttccgcaatatttcaagcactgtcctgtaagtt |
200 |
Q |
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| T |
40163414 |
atgacaagcaattaatttctatttatcaggaatacttacagcatataaggcttccaatttggagttgttccgcaatatttcaagcactgtcctgtaagtt |
40163513 |
T |
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| Q |
201 |
tcccatagaaatttaaaccatg |
222 |
Q |
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| T |
40163514 |
tcccatagaaatttaaaccatg |
40163535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 137 - 217
Target Start/End: Original strand, 33949620 - 33949700
Alignment:
| Q |
137 |
tacagcatataaggcttccaatttggagttgttccgcaatatttcaagcactgtcctgtaagtttcccatagaaatttaaa |
217 |
Q |
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|||||||||||| ||||| ||||| |||||||||||||||| |||||||||| |||||||||||||||| ||||||||||| |
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| T |
33949620 |
tacagcatataaagcttcgaattttgagttgttccgcaatacttcaagcactatcctgtaagtttcccagagaaatttaaa |
33949700 |
T |
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