View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_682 (Length: 221)
Name: NF10145A_low_682
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_682 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 30 - 203
Target Start/End: Complemental strand, 21378532 - 21378359
Alignment:
| Q |
30 |
gacgatcacaaggttgacactgagtccaagtgagatcactaccagtatcaaaaacaagagacaagttccttttaggagtaccaagccctacaacaacaaa |
129 |
Q |
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| T |
21378532 |
gacgagcacaaggttgacactgagtccaagtgagatcactaccagtatcaaaaacaagagacaagttccttttaggagtaccaagccctacaacaacaaa |
21378433 |
T |
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| Q |
130 |
atagttccctgttccaataaggttaccataaatagcaggtaggttaactgaagatagcttggagtgaatatagt |
203 |
Q |
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| T |
21378432 |
atagttccctgttccaataaggttaccataaatagcaggtaggttatctgaagatagcttggagtgaatatagt |
21378359 |
T |
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Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 36 - 180
Target Start/End: Complemental strand, 21404995 - 21404851
Alignment:
| Q |
36 |
cacaaggttgacactgagtccaagtgagatcactaccagtatcaaaaacaagagacaagttccttttaggagtaccaagccctacaacaacaaaatagtt |
135 |
Q |
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||||||||||||| |||||||||||||||||||||||||| ||||||| ||| ||||| | | |||||||||| |||||||||| |||||||||||| || |
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| T |
21404995 |
cacaaggttgacattgagtccaagtgagatcactaccagtgtcaaaaataagtgacaaatcctttttaggagttccaagccctaaaacaacaaaataatt |
21404896 |
T |
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| Q |
136 |
ccctgttccaataaggttaccataaatagcaggtaggttaactga |
180 |
Q |
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| T |
21404895 |
ccctgatccaataaggctaccagatttagctggtaggttagctga |
21404851 |
T |
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