View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_684 (Length: 221)

Name: NF10145A_low_684
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_684
NF10145A_low_684
[»] chr2 (1 HSPs)
chr2 (1-221)||(20454325-20454545)


Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 20454325 - 20454545
Alignment:
1 atgaagggtgttgttggtagggggagtaaggattgggatttaaatgattggagatgggatggtgatctttttacggctaagcaattgaattcggtgccga 100  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
20454325 atgaagggtgctgttggtagggggagtaaggattgggatttgaatgattggagatgggatggtgatctttttactgctaagcaactgaattcggtgccga 20454424  T
101 cggattgtaggaatcgtcaatatttacccgaaatacgtgaaaatgttgatgtttcgaataatttggtttctggtgaaggaagtagagagttggagaagcg 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||| |    
20454425 cggattgtaggaatcgtcaatttttacccgaaatacgtgaaaatgttgatgtttcgaataatttgatttctggggaaggtagtagagagttggagaagag 20454524  T
201 gaggaggggttttggtggtga 221  Q
    |||||||||||||||||||||    
20454525 gaggaggggttttggtggtga 20454545  T

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