View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_685 (Length: 220)

Name: NF10145A_low_685
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_685
NF10145A_low_685
[»] chr4 (12 HSPs)
chr4 (15-189)||(27514410-27514584)
chr4 (18-189)||(27468777-27468957)
chr4 (15-189)||(27524041-27524223)
chr4 (112-189)||(27508488-27508565)
chr4 (15-189)||(27503442-27503622)
chr4 (18-188)||(27476011-27476187)
chr4 (15-112)||(27489628-27489723)
chr4 (15-76)||(27508425-27508486)
chr4 (15-62)||(27556974-27557021)
chr4 (115-179)||(27517369-27517433)
chr4 (15-77)||(27506263-27506325)
chr4 (17-50)||(27497875-27497908)


Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 15 - 189
Target Start/End: Original strand, 27514410 - 27514584
Alignment:
Q  15 tggacatcagcattatcataatgaagaaaacatgtctaaagcatgtttcaaacattatgaagtacaccaattaaatcatcaacaaatatgaggttgcaca 114  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||  || |||||||||||||||||||||||||| || |||||||||| || |||    
T  27514410 tggacatcagcattatcataatgcagaaaacatgtctaaagcatgtttacaaaattatgaagtacaccaattaaatcatgaagaaatatgaggctg-aca 27514508  T
Q  115 tctcatttggtagcaagtggaagctttgtattggaca-ttgtttaagaaggtagggtacactcttagacaacacca 189  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27514509 tctcatttggtagcaagtggaagctttgtattggacatttgtttaagaaggtagggtacactcttagacaacacca 27514584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 27468957 - 27468777
Alignment:
Q  18 acatcagcattatcataatgaagaaaacatgtctaaagcatgtttcaaacattatgaagtacaccaattaaatcatcaacaaatatgaggttgcac---- 113  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||  || |||||||||||||||||||||||||| || |||||||||| |||||        
T  27468957 acatcggcattatcataatgaagaaaacatgtctgaagcatgtttacaaaattatgaagtacaccaattaaatcatgaagaaatatgaggctgcacttga 27468858  T
Q  114 ----atctcatttggtagcaagtggaagctttgtattggaca-ttgtttaagaaggtagggtacactcttagacaacacca 189  Q
        |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27468857 gcacatctcatttggtagcaagtggaagctttgtattggacatttgtttaagaaggtagggtacactcttagacaacacca 27468777  T

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Target: chr4; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 15 - 189
Target Start/End: Original strand, 27524041 - 27524223
Alignment:
Q  15 tggacatcagcattatcataatgaagaaaacatgtctaaagcatgtttcaaacattatgaagtacaccaattaaatcatcaacaaatatgaggttgcac- 113  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||   | ||||||||| | |||||||||||||| || |||||||| |||||||     
T  27524041 tggacatcagcattatcataatgaagaaaacatgtctgaagcatgtttacgaaattatgaaggaaaccaattaaatcatgaagaaatatgacgttgcact 27524140  T
Q  114 -------atctcatttggtagcaagtggaagctttgtattggacattgtttaagaaggtagggtacactcttagacaacacca 189  Q
           ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  27524141 tgagcacatctcatttggtagcaattggaagctttgtattggatattgtttaagaaggtagggtacactctaagacaacacca 27524223  T

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Target: chr4; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 112 - 189
Target Start/End: Original strand, 27508488 - 27508565
Alignment:
Q  112 acatctcatttggtagcaagtggaagctttgtattggacattgtttaagaaggtagggtacactcttagacaacacca 189  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  27508488 acatctcatttggtaggaagtggaagctttgtattggacattgtttaagaaggtagggtacactctaagacagcacca 27508565  T

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Target: chr4; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 189
Target Start/End: Original strand, 27503442 - 27503622
Alignment:
Q  15 tggacatcagcattatcataatgaagaaaacatgtctaaagcatgtttcaaacattatgaagtacaccaattaaatcatcaacaaatatgagg------t 108  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||  || |||||  |   | | ||||||||||| |||||||||||||      |    
T  27503442 tggacatcaacattatcataatgaagaaaacatgtctgaagcatgtttacaaaattattga---cgctaattaaatcatgaacaaatatgaggctatact 27503538  T
Q  109 tg--cacatctcatttggtagcaagtggaagctttgtattggacattgtttaag-aaggtagggtacactcttagacaacacca 189  Q
    ||  ||||||| ||||  |||||||||||||||||||||||||||||||||| | ||||||||| ||||||| |||||||||||    
T  27503539 tgatcacatcttattttttagcaagtggaagctttgtattggacattgtttaggaaaggtaggggacactctaagacaacacca 27503622  T

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Target: chr4; HSP #6
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 27476187 - 27476011
Alignment:
Q  18 acatcagcattatcataatgaagaaaacatgtctaaagcatgtttcaaacattatgaagtacaccaattaaatcatcaacaaatatgagg------ttg- 110  Q
    ||||| |||||||||||||||||||||||||||| ||||||| ||  || |||||  |   | | ||||||||||| |||||||||||||      |||     
T  27476187 acatcggcattatcataatgaagaaaacatgtctgaagcatgcttacaaaattattga---cgctaattaaatcatgaacaaatatgaggctatacttga 27476091  T
Q  111 -cacatctcatttggtagcaagtggaagctttgtattggacattgtttaag-aaggtagggtacactcttagacaacacc 188  Q
     ||||||| ||||  |||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||    
T  27476090 tcacatcttattttttagcaagtggaagctttgtattggacattgtttaggaaaggtagggtacactctaagacaacacc 27476011  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 112
Target Start/End: Original strand, 27489628 - 27489723
Alignment:
Q  15 tggacatcagcattatcataatgaagaaaacatgtctaaagcatgtttcaaacattatgaagtacaccaattaaatcatcaacaaatatgaggttgca 112  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||  || ||||  ||||  |||||||||  ||| || |||||||||||||||    
T  27489628 tggacatcgacattttcataatgaagaaaacatgtctaaagcatgtttacaaaattacaaagt--accaattaatgcatgaataaatatgaggttgca 27489723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 27508425 - 27508486
Alignment:
Q  15 tggacatcagcattatcataatgaagaaaacatgtctaaagcatgtttcaaacattatgaag 76  Q
    |||||||||||||| ||||||||||||||||||||||  |||||||||  || |||||||||    
T  27508425 tggacatcagcattgtcataatgaagaaaacatgtcttcagcatgtttataaaattatgaag 27508486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 27557021 - 27556974
Alignment:
Q  15 tggacatcagcattatcataatgaagaaaacatgtctaaagcatgttt 62  Q
    |||| |||| || |||||||||||||||||||||||||||||||||||    
T  27557021 tggaaatcaacactatcataatgaagaaaacatgtctaaagcatgttt 27556974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 27517369 - 27517433
Alignment:
Q  115 tctcatttggtagcaagtggaagctttgtattggacattgtttaagaaggtagggtacactctta 179  Q
    ||||| |||||  |||||||||||||||| |||| |||||||| ||||||| ||||||| |||||    
T  27517369 tctcaattggttccaagtggaagctttgtgttggccattgtttgagaaggtggggtacaatctta 27517433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 27506263 - 27506325
Alignment:
Q  15 tggacatcagcattatcataatgaagaaaacatgtctaaagcatgtttcaaacattatgaagt 77  Q
    |||||||||||| | | |||||||||||||||||||| || |||||||  || ||||||||||    
T  27506263 tggacatcagcactttgataatgaagaaaacatgtctgaaacatgtttacaaaattatgaagt 27506325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 27497908 - 27497875
Alignment:
Q  17 gacatcagcattatcataatgaagaaaacatgtc 50  Q
    ||||||| ||||||||||||||||||||||||||    
T  27497908 gacatcaacattatcataatgaagaaaacatgtc 27497875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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