View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10145A_low_686 (Length: 220)
Name: NF10145A_low_686
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_686 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 20 - 204
Target Start/End: Original strand, 48659101 - 48659285
Alignment:
| Q |
20 |
tcaggttattgttttacaatgggttctggaattttctcatggtgttcnnnnnnncaagaagttatagctcaatcaacggcagaggcagaatatatcgctg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48659101 |
tcaggttattgttttacaatgggttctggaattttctcatggtgttcaaaaaaacaagaagttatagctcaatcaacggcagaggcagaatatatcgctg |
48659200 |
T |
|
| Q |
120 |
ctgctgctgcggtgaaccaagctatttggatcagaaagctcatgacagacttgcacatgattcaaacagaaagtactaagatatt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48659201 |
ttgctgctgcggtgaaccaagctatttggatcagaaagctcatgacagacttgcacatgattcaaacagaaagtactaagatatt |
48659285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 20 - 204
Target Start/End: Original strand, 9309854 - 9310038
Alignment:
| Q |
20 |
tcaggttattgttttacaatgggttctggaattttctcatggtgttcnnnnnnncaagaagttatagctcaatcaacggcagaggcagaatatatcgctg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9309854 |
tcaggttattgttttacaatgggttctggaattttctcatggtgttcaaaaaaacaagaagttatagctcaatcaacggcagaggcagaatatatcgctg |
9309953 |
T |
|
| Q |
120 |
ctgctgctgcggtgaaccaagctatttggatcagaaagctcatgacagacttgcacatgattcaaacagaaagtactaagatatt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9309954 |
ttgctgctgcggtgaaccaagctatttggatcagaaagctcatgacagacttgcacatgattcaaacagaaagtactaagatatt |
9310038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 20 - 204
Target Start/End: Original strand, 31084631 - 31084815
Alignment:
| Q |
20 |
tcaggttattgttttacaatgggttctggaattttctcatggtgttcnnnnnnncaagaagttatagctcaatcaacggcagaggcagaatatatcgctg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
31084631 |
tcaggttattgttttacaatgggttctggagttttctcatggtgttcaaaaaaacaagaagttatagctcaatcaacggcagaggcagaatatatcgttg |
31084730 |
T |
|
| Q |
120 |
ctgctgctgcggtgaaccaagctatttggatcagaaagctcatgacagacttgcacatgattcaaacagaaagtactaagatatt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31084731 |
ttgctgctgcggtgaaccaagctatttggatcagaaagctcatgacagacttgcacatgattcaaacagaaagtactaagatatt |
31084815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 156
Target Start/End: Original strand, 22135048 - 22135120
Alignment:
| Q |
84 |
tagctcaatcaacggcagaggcagaatatatcgctgctgctgctgcggtgaaccaagctatttggatcagaaa |
156 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| | || || ||||| | ||||||||||||||| ||||||| |
|
|
| T |
22135048 |
tagctcaatctacggcagaggctgaatatatttcagcagcagctgctgcaaaccaagctatttggctcagaaa |
22135120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University