View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_694 (Length: 218)

Name: NF10145A_low_694
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_694
NF10145A_low_694
[»] chr6 (9 HSPs)
chr6 (19-196)||(28097221-28097398)
chr6 (31-146)||(29827263-29827378)
chr6 (118-197)||(28186620-28186699)
chr6 (121-197)||(28326704-28326780)
chr6 (121-197)||(28504340-28504416)
chr6 (118-197)||(28296617-28296696)
chr6 (118-197)||(28515377-28515456)
chr6 (34-164)||(27697379-27697509)
chr6 (34-146)||(29842785-29842897)
[»] chr2 (1 HSPs)
chr2 (34-197)||(3280885-3281048)
[»] chr5 (1 HSPs)
chr5 (19-197)||(16692093-16692271)
[»] scaffold0019 (1 HSPs)
scaffold0019 (19-182)||(57072-57235)
[»] chr8 (1 HSPs)
chr8 (19-155)||(31906322-31906458)
[»] chr4 (1 HSPs)
chr4 (63-198)||(5089772-5089907)


Alignment Details
Target: chr6 (Bit Score: 174; Significance: 9e-94; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 28097221 - 28097398
Alignment:
Q  19 aaaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28097221 aaaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaat 28097320  T
Q  119 tccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagaataattta 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28097321 tccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataattta 28097398  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 31 - 146
Target Start/End: Complemental strand, 29827378 - 29827263
Alignment:
Q  31 tcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttcta 130  Q
    |||||||||||||||||||||||||| |    |||||| ||||| ||||||| | ||||||| |||||||||| ||| || | ||| |||||||||||||    
T  29827378 tcatcttcctccaaagcatcaaaacttattttaagtatattttggatctctttattaggaatcctttcatatctatctaatatagatttccattcttcta 29827279  T
Q  131 tatgctttccatacaa 146  Q
    ||| ||||||| ||||    
T  29827278 tattctttccaaacaa 29827263  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 197
Target Start/End: Complemental strand, 28186699 - 28186620
Alignment:
Q  118 ttccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagaataatttac 197  Q
    ||||||||| |||||| ||||||| ||||||||||||| | || ||| || |||||||||||||||| || |||| ||||    
T  28186699 ttccattctcctatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccagaagcataagttac 28186620  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 197
Target Start/End: Complemental strand, 28326780 - 28326704
Alignment:
Q  121 cattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagaataatttac 197  Q
    |||||| |||||| ||||||| ||||||||||||| | || ||| || |||||||||||||||| || |||| ||||    
T  28326780 cattctactatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccagaagcataagttac 28326704  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 197
Target Start/End: Complemental strand, 28504416 - 28504340
Alignment:
Q  121 cattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagaataatttac 197  Q
    |||||| |||||| ||||||| ||||||||||||| | || ||| || |||||||||||||||| || |||| ||||    
T  28504416 cattctactatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccagaagcataagttac 28504340  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 197
Target Start/End: Original strand, 28296617 - 28296696
Alignment:
Q  118 ttccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagaataatttac 197  Q
    |||||||||  ||||| ||||||| ||||||||||||| | || ||| || |||||||||||||||| || |||| ||||    
T  28296617 ttccattctcttatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccagaagcataagttac 28296696  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 197
Target Start/End: Complemental strand, 28515456 - 28515377
Alignment:
Q  118 ttccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagaataatttac 197  Q
    |||||||||  ||||| ||||||| ||||||||||||| | || ||| || |||||||||||||||| || |||| ||||    
T  28515456 ttccattctcttatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccagaagcataagttac 28515377  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 164
Target Start/End: Original strand, 27697379 - 27697509
Alignment:
Q  34 tcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttctatat 133  Q
    ||||| |||||||||||| | ||||| | |||||| ||||| ||||||| | | ||||| || ||||| | ||| || | | | |||||||||||||| |    
T  27697379 tcttcttccaaagcatcatagctcactctaagtatcttttggatctctttattgggaatcctgtcatacccatctaatatatacttccattcttctatgt 27697478  T
Q  134 gctttccatacaagttggaacctaatatttc 164  Q
     ||||||| ||||||| ||||| | ||||||    
T  27697479 tctttccaaacaagttagaacccactatttc 27697509  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 146
Target Start/End: Original strand, 29842785 - 29842897
Alignment:
Q  34 tcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttctatat 133  Q
    |||||||||||||||||||| || |    |||||| || || ||||||| | ||||||| |||||||| | ||| ||   ||| ||||||||||||||||    
T  29842785 tcttcctccaaagcatcaaagcttattttaagtatattgtggatctctttattaggaatcctttcatacctatctaatgtagatttccattcttctatat 29842884  T
Q  134 gctttccatacaa 146  Q
     ||||||| ||||    
T  29842885 tctttccaaacaa 29842897  T

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Target: chr2 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 34 - 197
Target Start/End: Complemental strand, 3281048 - 3280885
Alignment:
Q  34 tcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttctatat 133  Q
    ||||||||||||||||||||||||||   |||||| || |||||||||| | ||||||| ||||||||||||||||||||||||||||| |||| |||||    
T  3281048 tcttcctccaaagcatcaaaactcactttaagtatcttctgaatctctttattaggaatcctttcatatcgatccaacaaagaattccactcttttatat 3280949  T
Q  134 gctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagaataatttac 197  Q
     ||||||| |||||||||||||||||| ||| || |||||||||||||||| || |||||||||    
T  3280948 tctttccaaacaagttggaacctaatacttctaatgccaatggaaggccagaagcataatttac 3280885  T

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Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 197
Target Start/End: Complemental strand, 16692271 - 16692093
Alignment:
Q  19 aaaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaat 118  Q
    ||||||||| | |||||||||||||||  ||||||||| ||   ||||||||| |||||   || || |||||| | |||||||||||| ||   ||| |    
T  16692271 aaaacactcttttcatcttcctccaaactatcaaaacttactttaagtattttgtgaattcgtttaccaggaatccattcatatcgatcaaatgtagatt 16692172  T
Q  119 tccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagaataatttac 197  Q
    ||||||||||||||| ||||||| ||||||| || |||| || ||| || || ||||||||||||| || |||| ||||    
T  16692171 tccattcttctatattctttccaaacaagttagatcctactacttctaaagctaatggaaggccagaagcataagttac 16692093  T

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Target: scaffold0019 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 57072 - 57235
Alignment:
Q  19 aaaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaat 118  Q
    |||||| || ||||||||||||||||||||||||| || ||   |||||| | ||| |||| || | | ||||| ||||||||  |||  ||   ||| |    
T  57072 aaaacattcttctcatcttcctccaaagcatcaaagcttactttaagtatctcttggatctttttaatgggaatcctttcatactgatttaatgcagatt 57171  T
Q  119 tccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggcc 182  Q
    |||||||| |||||| ||||||| ||||||| ||||| | || ||| |||||||||||||||||    
T  57172 tccattctcctatattctttccaaacaagttcgaacccactacttctaaggccaatggaaggcc 57235  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 31906458 - 31906322
Alignment:
Q  19 aaaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaat 118  Q
    ||||||||  |||||||||||||||||||||||||||| ||    ||||| ||||| ||||||| | | |||||  ||||||||||||  ||   ||| |    
T  31906458 aaaacacttttctcatcttcctccaaagcatcaaaacttactttgagtatattttggatctctttatttggaatgatttcatatcgatgtaatgcagatt 31906359  T
Q  119 tccattcttctatatgctttccatacaagttggaacc 155  Q
     |||||||| ||||| ||||||| | || ||||||||    
T  31906358 cccattcttgtatattctttccaaataaattggaacc 31906322  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 198
Target Start/End: Original strand, 5089772 - 5089907
Alignment:
Q  63 aagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttctatatgctttccatacaagttggaacctaatatt 162  Q
    |||||| ||||| || |||| | ||||||| ||||||||   ||| |  ||||| ||||||| |||||||| ||||||| |||| |||||||| |  | |    
T  5089772 aagtatcttttggatttctttattaggaatcctttcatactcatctagtaaagatttccatttttctatatcctttccaaacaaattggaacccacaact 5089871  T
Q  163 tccaaggccaatggaaggccagcagaataatttacc 198  Q
    || || |||||||||||||||| || |||| |||||    
T  5089872 tctaaagccaatggaaggccagaagcataagttacc 5089907  T

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