View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_697 (Length: 218)
Name: NF10145A_low_697
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_697 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 30364415 - 30364632
Alignment:
| Q |
1 |
tcaatagtactattattatcatgtggtccttacaaagatatatttatttcatggacagacgggacagacggttgctattaagaagattcgaatcggaaaa |
100 |
Q |
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| T |
30364415 |
tcaatagtactattattatcatgtggtccttacaaagatatatttatttcatggacagacgggacagacggttgctattaagaagattcgaatcggaaaa |
30364514 |
T |
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| Q |
101 |
cagaaagaaggggtgaattttactgctcttagagaaattaaactgcttaaagagctcaaagatcccaatataattgagttgattgattgctccccacata |
200 |
Q |
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| T |
30364515 |
cagaaagaaggggtgaattttactgctcttagagaaattaaactgcttaaagagctcaaagatcccaatataattgagttgattgattgcttcccacata |
30364614 |
T |
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| Q |
201 |
aagggaatttgcatcttg |
218 |
Q |
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| T |
30364615 |
aagggaatttgcatcttg |
30364632 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 187
Target Start/End: Complemental strand, 21439426 - 21439349
Alignment:
| Q |
110 |
ggggtgaattttactgctcttagagaaattaaactgcttaaagagctcaaagatcccaatataattgagttgattgat |
187 |
Q |
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| T |
21439426 |
ggggttaattttacagctcttagagaaataaaacttctcaaagagctcaaacatccaaacattgttgatttgattgat |
21439349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 90
Target Start/End: Complemental strand, 21439499 - 21439452
Alignment:
| Q |
43 |
tttatttcatggacagacgggacagacggttgctattaagaagattcg |
90 |
Q |
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| T |
21439499 |
tttatttcatggacagaccggacaaatggttgcaattaagaagattcg |
21439452 |
T |
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