View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_7 (Length: 493)

Name: NF10145A_low_7
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_7
NF10145A_low_7
[»] chr5 (1 HSPs)
chr5 (12-486)||(39252447-39252911)
[»] chr1 (3 HSPs)
chr1 (155-208)||(35201495-35201548)
chr1 (155-208)||(35202375-35202428)
chr1 (160-208)||(37643843-37643891)
[»] chr3 (2 HSPs)
chr3 (157-211)||(47007765-47007819)
chr3 (157-208)||(47007023-47007074)
[»] chr2 (4 HSPs)
chr2 (166-210)||(29308399-29308443)
chr2 (166-210)||(29309102-29309146)
chr2 (155-210)||(4161336-4161390)
chr2 (166-210)||(29283910-29283954)
[»] chr8 (2 HSPs)
chr8 (155-208)||(33520893-33520946)
chr8 (166-208)||(33520216-33520258)
[»] chr6 (1 HSPs)
chr6 (155-210)||(4275070-4275125)
[»] scaffold0143 (1 HSPs)
scaffold0143 (166-208)||(1625-1667)


Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 12 - 486
Target Start/End: Original strand, 39252447 - 39252911
Alignment:
Q  12 agagaacaaggccagtgttgcaaatgtattaacagcaatagacgagtgctcatcacgtgaaagtcagattatgagggagtattattattagagaaagtta 111  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39252447 agagaataaggccagtgttgcaaatgtattaacagcaatagacgagtgctcatcacgtgaaagtcagattatgagggagtattactattagagaaagtta 39252546  T
Q  112 gagtttaattccgataggctaatgtgtaaactgccttacgctgttatgaaaggtaattgagatggccatttcctccctaaatggagaggatctgcactca 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  39252547 gagtttaattccgataggctaatgtgtaaactgccttacgctgttatgaaaggtaattgagatggccatttcctcccaaaatggagaggatctgcactca 39252646  T
Q  212 atgaggagatagtcaacccataaaaataggaaatatctatgttttaatttaggggcgtctatataatgaaagtgagtgaatgaattgagagaaatcggtg 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||    
T  39252647 atgaggagatagtcaacccataaaaataggaaatatctatgttttaatt----------tatataatgaaagtgagtgaatgaattgagagaaatcggtg 39252736  T
Q  312 gtaactaacgatggcggcatcaccatccttttgtcatagaaggagcagatcatcgaattttcaaacaagaatgatggcagaagcatgttcatatttacca 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39252737 gtaactaacgatggcggcatcaccatccttttgtcatagaaggagcagatcatcgaattttcaaacaagaatgatggcagaagcatgttcatatttacca 39252836  T
Q  412 gagtttaccagaggagttataggaatgcatcttgaaattccacaacgcagacaatcacactttgatgtccatctc 486  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  39252837 gagtttaccagaggagttatgggaatgcatcttgaaattccacaacgcagacaatcacactttgaagtccgtctc 39252911  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 35201548 - 35201495
Alignment:
Q  155 ttatgaaaggtaattgagatggccatttcctccctaaatggagaggatctgcac 208  Q
    |||||||||| ||||||||||||||||| ||||| |||||||||||||||||||    
T  35201548 ttatgaaaggaaattgagatggccatttactccccaaatggagaggatctgcac 35201495  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 35202375 - 35202428
Alignment:
Q  155 ttatgaaaggtaattgagatggccatttcctccctaaatggagaggatctgcac 208  Q
    |||||||||| ||||||||||||||||||||| | |||||||||||||||||||    
T  35202375 ttatgaaaggaaattgagatggccatttcctcaccaaatggagaggatctgcac 35202428  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 37643843 - 37643891
Alignment:
Q  160 aaaggtaattgagatggccatttcctccctaaatggagaggatctgcac 208  Q
    ||||| ||||||||| | ||||| ||||||||||||||||||| |||||    
T  37643843 aaaggaaattgagattgtcattttctccctaaatggagaggatatgcac 37643891  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 47007765 - 47007819
Alignment:
Q  157 atgaaaggtaattgagatggccatttcctccctaaatggagaggatctgcactca 211  Q
    ||||| || ||||||||| || |||||||||||||||||||||||||||||||||    
T  47007765 atgaatggaaattgagattgcaatttcctccctaaatggagaggatctgcactca 47007819  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 157 - 208
Target Start/End: Complemental strand, 47007074 - 47007023
Alignment:
Q  157 atgaaaggtaattgagatggccatttcctccctaaatggagaggatctgcac 208  Q
    ||||| || ||||||||| || ||||||||||||||||||||||||||||||    
T  47007074 atgaatggaaattgagattgcaatttcctccctaaatggagaggatctgcac 47007023  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 29308399 - 29308443
Alignment:
Q  166 aattgagatggccatttcctccctaaatggagaggatctgcactc 210  Q
    ||||||||| || ||||||||||||||||||||||||||||||||    
T  29308399 aattgagattgcaatttcctccctaaatggagaggatctgcactc 29308443  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 29309146 - 29309102
Alignment:
Q  166 aattgagatggccatttcctccctaaatggagaggatctgcactc 210  Q
    ||||||||| || ||||||||||||||||||||||||||||||||    
T  29309146 aattgagattgcaatttcctccctaaatggagaggatctgcactc 29309102  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 4161336 - 4161390
Alignment:
Q  155 ttatgaaaggtaattgagatggccatttcctccctaaatggagaggatctgcactc 210  Q
    |||||||||| ||||||||| || ||||| |||| |||||||||||||||||||||    
T  4161336 ttatgaaaggaaattgagattgcaatttc-tccccaaatggagaggatctgcactc 4161390  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 29283910 - 29283954
Alignment:
Q  166 aattgagatggccatttcctccctaaatggagaggatctgcactc 210  Q
    |||| |||| || |||||||||||||||||||||||||| |||||    
T  29283910 aatttagattgcaatttcctccctaaatggagaggatctacactc 29283954  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 33520893 - 33520946
Alignment:
Q  155 ttatgaaaggtaattgagatggccatttcctccctaaatggagaggatctgcac 208  Q
    |||| ||||| ||||| ||||||||||||||| | |||||||||||||||||||    
T  33520893 ttattaaaggaaattgtgatggccatttcctcaccaaatggagaggatctgcac 33520946  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 208
Target Start/End: Complemental strand, 33520258 - 33520216
Alignment:
Q  166 aattgagatggccatttcctccctaaatggagaggatctgcac 208  Q
    |||||||||||||||||||||   |||||||||||||||||||    
T  33520258 aattgagatggccatttcctcataaaatggagaggatctgcac 33520216  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 210
Target Start/End: Complemental strand, 4275125 - 4275070
Alignment:
Q  155 ttatgaaaggtaattgagatggccatttcctccctaaatggagaggatctgcactc 210  Q
    ||||||| || ||||||||| ||||||| || ||||||||||||||||||| ||||    
T  4275125 ttatgaatggaaattgagattgccattttctacctaaatggagaggatctgtactc 4275070  T

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Target: scaffold0143 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 208
Target Start/End: Complemental strand, 1667 - 1625
Alignment:
Q  166 aattgagatggccatttcctccctaaatggagaggatctgcac 208  Q
    |||||||||||||||||||||   |||||||||||||||||||    
T  1667 aattgagatggccatttcctcataaaatggagaggatctgcac 1625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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