View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_70 (Length: 399)
Name: NF10145A_low_70
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_70 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 13 - 384
Target Start/End: Complemental strand, 2814100 - 2813729
Alignment:
| Q |
13 |
ggacatcagattaccagtttcctctggaaaccggagggttaagacaaaaataagaaattagaactgtaattcaattcctgatgttaacttgttaactctg |
112 |
Q |
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| T |
2814100 |
ggacatcagattaccagtttcctctggaaaccggagggttaagacaaaaataagaaattagaactgtaattcaattcctgatgttaacttgttaactctg |
2814001 |
T |
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| Q |
113 |
ttcttatttttgtgttcataatggatcaaagtatagttttaaaattgcaattgaagttcattaattaggatttaggaggtggtcctactaccctgatcaa |
212 |
Q |
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| T |
2814000 |
ttcttatttttgtgttcataatggatcaaagtatagttttaaaattgcaattgaagttgattaattaggatttaggaggtggtcctactaccctgatcaa |
2813901 |
T |
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| Q |
213 |
tttcattgtgtctgttctgatcttttgtctgttgattttgtttatgcagtcatctggtcgaatctgtatgactgttgcgactaatgtttcacggtttgtg |
312 |
Q |
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| T |
2813900 |
tttcattgtgtctgttctgatcttttgtctgttgattttgtttattcagtcatctggtcggatctgtatggctgttgcgactaatgtttctcggtttgag |
2813801 |
T |
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| Q |
313 |
ggtatggcaatggctccgcctgatccaattcttggaggttctgaagcatttaaagcagacacgagtgatgtc |
384 |
Q |
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| T |
2813800 |
ggtataccaatggctcctcctgatccaattcttggagtttccgaagcatttaaagcagacacgagcgatgtc |
2813729 |
T |
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