View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_704 (Length: 217)

Name: NF10145A_low_704
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_704
NF10145A_low_704
[»] chr2 (9 HSPs)
chr2 (17-204)||(8403626-8403813)
chr2 (22-204)||(8429486-8429668)
chr2 (24-128)||(8376193-8376297)
chr2 (53-128)||(8395879-8395954)
chr2 (53-128)||(8405618-8405693)
chr2 (53-128)||(8430889-8430964)
chr2 (53-128)||(8416822-8416897)
chr2 (24-128)||(8411709-8411813)
chr2 (24-128)||(8433807-8433911)
[»] chr4 (2 HSPs)
chr4 (54-204)||(55335978-55336128)
chr4 (24-204)||(55330516-55330696)
[»] scaffold1738 (1 HSPs)
scaffold1738 (53-128)||(25-100)


Alignment Details
Target: chr2 (Bit Score: 164; Significance: 8e-88; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 8403626 - 8403813
Alignment:
Q  17 gacaacagattttgagggaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattc 116  Q
    |||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8403626 gacatcagattttgaggcaagctctctcatctgcattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcatcattttctcttttattc 8403725  T
Q  117 aaatctttctcttcaatagtttgttcaactgtctcttccaaaagctcaaaaaatccaccacagtttctatacatctcaaacaccatac 204  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8403726 aaatctttctcttcaataatttcttcaactgtctcttccaaaagctcaaaaaatccaccacagtttctatacatctcaaacaccatac 8403813  T

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Target: chr2; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 22 - 204
Target Start/End: Original strand, 8429486 - 8429668
Alignment:
Q  22 cagattttgagggaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatc 121  Q
    ||||||| |||| ||  |||||||||||||||||||||||||||||||  || ||||||||||| |||||||| || || ||||||||||||||||||||    
T  8429486 cagatttcgaggcaaattctctcatctccattacacttcttcccaattttaaagcaatcttcatttcaaacacttccccgttttctcttttattcaaatc 8429585  T
Q  122 tttctcttcaatagtttgttcaactgtctcttccaaaagctcaaaaaatccaccacagtttctatacatctcaaacaccatac 204  Q
    ||| ||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||    
T  8429586 tttatcttcaatagtttcttcaaccgtctcttccaaaagctcaaaaaatccactacagtttctatacatctgaaacatcatac 8429668  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 128
Target Start/End: Complemental strand, 8376297 - 8376193
Alignment:
Q  24 gattttgagggaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctt 123  Q
    |||||||||| ||| || |||| |||   ||||||||||||||||||||| || || ||||| ||||| | ||| |||||||||||||| |  |||||||    
T  8376297 gattttgaggcaagttccctcagctctgatacacttcttcccaattgcaaagccattttcatttcaaatagctctccattttctcttttctctaaatctt 8376198  T
Q  124 tctct 128  Q
    |||||    
T  8376197 tctct 8376193  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 128
Target Start/End: Complemental strand, 8395954 - 8395879
Alignment:
Q  53 tacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctttctct 128  Q
    ||||||||||||||||||||| || || ||||| ||||| | ||| |||||||||||||| |  ||||||||||||    
T  8395954 tacacttcttcccaattgcaaagccattttcatttcaaatagctctccattttctcttttctctaaatctttctct 8395879  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 128
Target Start/End: Original strand, 8405618 - 8405693
Alignment:
Q  53 tacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctttctct 128  Q
    ||||||||||||||||||||| || || ||||| ||||| | ||| |||||||||||||| |  ||||||||||||    
T  8405618 tacacttcttcccaattgcaaagccattttcatttcaaatagctctccattttctcttttctctaaatctttctct 8405693  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 128
Target Start/End: Original strand, 8430889 - 8430964
Alignment:
Q  53 tacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctttctct 128  Q
    ||||||| ||||||||||||| || |||||||| ||||| | ||| |||||||||||||| |  ||||||||||||    
T  8430889 tacactttttcccaattgcaaagccatcttcatttcaaatagctctccattttctcttttctctaaatctttctct 8430964  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 128
Target Start/End: Original strand, 8416822 - 8416897
Alignment:
Q  53 tacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctttctct 128  Q
    |||| |||||||||||||||| || || ||||| ||||| | ||| |||||||||||||| |  ||||||||||||    
T  8416822 tacatttcttcccaattgcaaagccattttcatttcaaatagctctccattttctcttttctctaaatctttctct 8416897  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 128
Target Start/End: Original strand, 8411709 - 8411813
Alignment:
Q  24 gattttgagggaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctt 123  Q
    |||||||||| ||| || |||| |||  | ||||||||||||||| |||| || || ||||  ||||| | ||| |||||||||||||| |  |||||||    
T  8411709 gattttgaggcaagttccctcagctctgtgacacttcttcccaatcgcaaagccattttcaattcaaatagctctccattttctcttttctctaaatctt 8411808  T
Q  124 tctct 128  Q
    |||||    
T  8411809 tctct 8411813  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 128
Target Start/End: Original strand, 8433807 - 8433911
Alignment:
Q  24 gattttgagggaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctt 123  Q
    |||||||||| ||| || |||| |||  | ||||||||||||||| |||| || || ||||  ||||| | ||| |||||||||||||| |  |||||||    
T  8433807 gattttgaggcaagttccctcagctctgtgacacttcttcccaatcgcaaagccattttcaattcaaatagctctccattttctcttttctctaaatctt 8433906  T
Q  124 tctct 128  Q
    |||||    
T  8433907 tctct 8433911  T

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Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 54 - 204
Target Start/End: Original strand, 55335978 - 55336128
Alignment:
Q  54 acacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctttctcttcaatagtttgttcaactgtctctt 153  Q
    ||||||||||| ||   |||||| || ||||| ||||| | |||||||||||||||||| | |||||||||||| ||||  ||   |||||   |||||     
T  55335978 acacttcttcctaacatcaatgccattttcatttcaaatatctcaccattttctcttttttccaaatctttctcctcaagtgtgctttcaatactctctc 55336077  T
Q  154 ccaaaagctcaaaaaatccaccacagtttctatacatctcaaacaccatac 204  Q
    | || | || ||||||||||||||||||||||||||| |||||||||||||    
T  55336078 caaacatcttaaaaaatccaccacagtttctatacatttcaaacaccatac 55336128  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 204
Target Start/End: Original strand, 55330516 - 55330696
Alignment:
Q  24 gattttgagggaagctctctcatctccattacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctt 123  Q
    |||||||| | |||||||||||||||    ||| ||||||||||   ||| || || ||||| ||||| | ||| |||||||||||  | |  |||||||    
T  55330516 gattttgaagcaagctctctcatctcagaaacatttcttcccaacatcaaagccattttcatttcaaataactctccattttctctcatctcaaaatctt 55330615  T
Q  124 tctcttcaatagtttgttcaactgtctcttccaaaagctcaaaaaatccaccacagtttctatacatctcaaacaccatac 204  Q
    ||||||| |  ||||  ||||| ||||||||||| |||| ||  ||||||||||| ||||||||||| ||||| |||||||    
T  55330616 tctcttccaatgtttcatcaacagtctcttccaacagcttaaggaatccaccacaatttctatacatttcaaataccatac 55330696  T

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Target: scaffold1738 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1738
Description:

Target: scaffold1738; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 128
Target Start/End: Complemental strand, 100 - 25
Alignment:
Q  53 tacacttcttcccaattgcaatgcaatcttcatctcaaacacctcaccattttctcttttattcaaatctttctct 128  Q
    ||||||||||||||||||||| || || ||||| ||||| | ||| |||||||||||||| |  ||||||||||||    
T  100 tacacttcttcccaattgcaaagccattttcatttcaaatagctctccattttctcttttctctaaatctttctct 25  T

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