View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_706 (Length: 216)

Name: NF10145A_low_706
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_706
NF10145A_low_706
[»] chr2 (7 HSPs)
chr2 (21-216)||(2803209-2803404)
chr2 (137-211)||(33561499-33561573)
chr2 (137-209)||(30312825-30312897)
chr2 (112-214)||(13766795-13766899)
chr2 (137-210)||(29873586-29873659)
chr2 (168-209)||(36005930-36005971)
chr2 (168-212)||(31468797-31468841)
[»] chr5 (2 HSPs)
chr5 (107-214)||(10351216-10351325)
chr5 (137-209)||(36521946-36522018)
[»] chr6 (4 HSPs)
chr6 (137-214)||(8481962-8482039)
chr6 (137-204)||(5034876-5034943)
chr6 (137-178)||(27226675-27226716)
chr6 (137-209)||(6071168-6071240)
[»] chr4 (3 HSPs)
chr4 (112-190)||(42480533-42480611)
chr4 (168-214)||(22028412-22028458)
chr4 (137-209)||(34544142-34544215)
[»] chr1 (3 HSPs)
chr1 (137-209)||(1188638-1188710)
chr1 (168-214)||(32594761-32594807)
chr1 (137-210)||(1187413-1187486)
[»] chr8 (1 HSPs)
chr8 (137-214)||(4154326-4154402)
[»] chr7 (2 HSPs)
chr7 (168-209)||(21619095-21619136)
chr7 (172-216)||(7192786-7192830)
[»] chr3 (2 HSPs)
chr3 (137-178)||(260805-260846)
chr3 (112-189)||(32930698-32930775)


Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-100; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 21 - 216
Target Start/End: Complemental strand, 2803404 - 2803209
Alignment:
Q  21 tttcaaataagaaataacccttaaatatactttgtttcttacctaaggcaatgaaaaaatgtgatacccacaccaacggcaacaattgtaggttaaaagt 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2803404 tttcaaataagaaataacccttaaatatactttgtttcttacctaaggcaatgaaaaaatgtgataccaacaccaacggcaacaattgtaggttaaaagt 2803305  T
Q  121 ctcacattatttaaagaagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtcca 216  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2803304 ctcacattgtttaaagaagtggaggttgaacattctataaaagagatgacccataaacttaatgtcttaacgttttgggtaaaagtgtgatgtcca 2803209  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 137 - 211
Target Start/End: Complemental strand, 33561573 - 33561499
Alignment:
Q  137 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgat 211  Q
    ||||||||||| |||| | |||||  |||| |||||||||||||| |||||||| ||||||||||| ||||||||    
T  33561573 aagtggaggttaaacactttataagtgagaggacccataaactcattgtcttaaggttttgggtaagagtgtgat 33561499  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 209
Target Start/End: Original strand, 30312825 - 30312897
Alignment:
Q  137 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtg 209  Q
    |||||||||||||||| | |||||   |||||||||||||||| | |  ||||| ||||||||||||||||||    
T  30312825 aagtggaggttgaacactttataacttagatgacccataaacttatttccttaaggttttgggtaaaagtgtg 30312897  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 214
Target Start/End: Original strand, 13766795 - 13766899
Alignment:
Q  112 gttaaaagtctcacattatttaaagaagtggaggttgaacattctataaaa--gagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtg 209  Q
    |||| |||||| ||||| |||| | |||||||||||||  ||| |||||||  ||||||||  |||||||||||| ||||| |||||| || ||| ||||    
T  13766795 gttagaagtctaacattgtttagaaaagtggaggttgattattttataaaagtgagatgactaataaactcaatgacttaaggttttgtgttaaaatgtg 13766894  T
Q  210 atgtc 214  Q
     ||||    
T  13766895 gtgtc 13766899  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 210
Target Start/End: Complemental strand, 29873659 - 29873586
Alignment:
Q  137 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtga 210  Q
    |||||||||||||||||| |||||  | || ||| |||||||||| || ||||| |||||| |||| |||||||    
T  29873659 aagtggaggttgaacattttataagtgggaggactcataaactcattgccttaaggttttgagtaagagtgtga 29873586  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 168 - 209
Target Start/End: Complemental strand, 36005971 - 36005930
Alignment:
Q  168 gacccataaactcaatgtcttaacgttttgggtaaaagtgtg 209  Q
    |||||||||||||| || ||||| ||||||||||||||||||    
T  36005971 gacccataaactcattgccttaaggttttgggtaaaagtgtg 36005930  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 31468841 - 31468797
Alignment:
Q  168 gacccataaactcaatgtcttaacgttttgggtaaaagtgtgatg 212  Q
    |||||||||||||| || ||||| ||||||||||| |||||||||    
T  31468841 gacccataaactcattgccttaaggttttgggtaagagtgtgatg 31468797  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 214
Target Start/End: Complemental strand, 10351325 - 10351216
Alignment:
Q  107 tgtaggttaaaagtctcacattatttaaagaagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaa--cgttttgggtaaaa 204  Q
    |||| |||| ||||||||||||   |||| ||| |||||||||||||| ||||   || |||||||||||||||| ||||||||    ||||||||||||    
T  10351325 tgtaagttagaagtctcacattggctaaaaaagcggaggttgaacattttatacgtgaaatgacccataaactcattgtcttaaatatttttgggtaaaa 10351226  T
Q  205 gtgtgatgtc 214  Q
    ||||||||||    
T  10351225 gtgtgatgtc 10351216  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 209
Target Start/End: Complemental strand, 36522018 - 36521946
Alignment:
Q  137 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtg 209  Q
    |||| ||||||||||| ||| |||| |||| |||||||||||  | || ||||| ||||||||||| ||||||    
T  36522018 aagttgaggttgaacactctttaaatgagaggacccataaaccaattgccttaaggttttgggtaagagtgtg 36521946  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 214
Target Start/End: Original strand, 8481962 - 8482039
Alignment:
Q  137 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtc 214  Q
    |||||||||||||||| | |||||| |||||||| |||||||||| || |||||  |||||||||| |||||| ||||    
T  8481962 aagtggaggttgaacactttataaatgagatgactcataaactcattgccttaagattttgggtaagagtgtggtgtc 8482039  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 204
Target Start/End: Complemental strand, 5034943 - 5034876
Alignment:
Q  137 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaa 204  Q
    ||||||||||||| || | |||||  |||||||||||| |||||||||| |||| ||||||| |||||    
T  5034943 aagtggaggttgaccactttataagtgagatgacccatcaactcaatgttttaaggttttggataaaa 5034876  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 178
Target Start/End: Complemental strand, 27226716 - 27226675
Alignment:
Q  137 aagtggaggttgaacattctataaaagagatgacccataaac 178  Q
    ||||||||||||| |||| |||||| ||||||||||||||||    
T  27226716 aagtggaggttgatcattttataaatgagatgacccataaac 27226675  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 209
Target Start/End: Original strand, 6071168 - 6071240
Alignment:
Q  137 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtg 209  Q
    |||||||||||||||| | |||||  ||||||| ||||||||||| || |||||  |||||| ||| ||||||    
T  6071168 aagtggaggttgaacactttataagtgagatgatccataaactcattgccttaagattttggataagagtgtg 6071240  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 42480533 - 42480611
Alignment:
Q  112 gttaaaagtctcacattatttaaagaagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaa 190  Q
    ||||||||||||| | ||||| || |||||||||||||||| | | |||  ||||||| |||||||||| |||||||||    
T  42480533 gttaaaagtctcatactatttgaaaaagtggaggttgaacaatatgtaagtgagatgatccataaactcgatgtcttaa 42480611  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 22028458 - 22028412
Alignment:
Q  168 gacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtc 214  Q
    |||||||||||||| |||||||| ||||||||||| |||||| ||||    
T  22028458 gacccataaactcattgtcttaatgttttgggtaagagtgtggtgtc 22028412  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 209
Target Start/End: Original strand, 34544142 - 34544215
Alignment:
Q  137 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacg-ttttgggtaaaagtgtg 209  Q
    ||||||||||||| || | |||||| |||| |||||||||||||| || ||||| | |||||||||| ||||||    
T  34544142 aagtggaggttgatcactttataaatgagaggacccataaactcattgccttaaggtttttgggtaagagtgtg 34544215  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 209
Target Start/End: Complemental strand, 1188710 - 1188638
Alignment:
Q  137 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtg 209  Q
    |||||||||||||| ||| |||||  |||| ||| |||||||||| ||  |||| ||||||||||||||||||    
T  1188710 aagtggaggttgaatattttataagtgagaagactcataaactcattgctttaaggttttgggtaaaagtgtg 1188638  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 32594807 - 32594761
Alignment:
Q  168 gacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtc 214  Q
    |||||||||||||| |||||||| ||||||||||| |||||| ||||    
T  32594807 gacccataaactcattgtcttaaggttttgggtaagagtgtggtgtc 32594761  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 210
Target Start/End: Complemental strand, 1187486 - 1187413
Alignment:
Q  137 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtga 210  Q
    ||||||||||| |||||| |||||  |||| |||||||||||||| |  |||||  ||||| ||||||||||||    
T  1187486 aagtggaggttaaacattttataagtgagaagacccataaactcattaccttaagattttgagtaaaagtgtga 1187413  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 214
Target Start/End: Complemental strand, 4154402 - 4154326
Alignment:
Q  137 aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgtgatgtc 214  Q
    |||||||||||||||| | |||||  |||| |||||||||||||| || |||||  ||||||||||  ||||||||||    
T  4154402 aagtggaggttgaacactttataagtgaga-gacccataaactcattgccttaatattttgggtaagtgtgtgatgtc 4154326  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 168 - 209
Target Start/End: Complemental strand, 21619136 - 21619095
Alignment:
Q  168 gacccataaactcaatgtcttaacgttttgggtaaaagtgtg 209  Q
    ||||||||||| || |||||||| ||||||||||||||||||    
T  21619136 gacccataaacccattgtcttaaggttttgggtaaaagtgtg 21619095  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 7192786 - 7192830
Alignment:
Q  172 cataaactcaatgtcttaacgttttgggtaaaagtgtgatgtcca 216  Q
    ||||||||||||||||||| |||||| |||||  |||||||||||    
T  7192786 cataaactcaatgtcttaaggttttgagtaaagatgtgatgtcca 7192830  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 178
Target Start/End: Complemental strand, 260846 - 260805
Alignment:
Q  137 aagtggaggttgaacattctataaaagagatgacccataaac 178  Q
    ||||||||||||| |||| |||||| ||||||||||||||||    
T  260846 aagtggaggttgatcattttataaatgagatgacccataaac 260805  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 189
Target Start/End: Original strand, 32930698 - 32930775
Alignment:
Q  112 gttaaaagtctcacattatttaaagaagtggaggttgaacattctataaaagagatgacccataaactcaatgtctta 189  Q
    |||| |||||| | ||| |||| | |||| || |||||||||| |||||  |||||||| ||||||||||||||||||    
T  32930698 gttagaagtcttatattgtttagaaaagtagaagttgaacattttataagtgagatgactcataaactcaatgtctta 32930775  T

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