View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_707 (Length: 216)
Name: NF10145A_low_707
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_707 |
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Alignment Details
Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 7324602 - 7324508
Alignment:
| Q |
13 |
gacatcagtgttcttaacactattgaggatatgtgtaatcgatatcattatcaaggttagttactcagttaattgcaccttattcaattctaaag |
107 |
Q |
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| T |
7324602 |
gacatcattgttcttaacactattgaggatatgtgtaatcgatatcattatcaaggttagttactcagttaattgcaccttattcaattctaaag |
7324508 |
T |
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Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 7243749 - 7243839
Alignment:
| Q |
13 |
gacatcagtgttcttaacactattgaggatatgtgtaatcgatatcattatcaaggttagttactcagttaattgcaccttattcaattct |
103 |
Q |
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| T |
7243749 |
gacatcactgttcttaacactattgaggatatgtgtaatcgattccattatcaaggttagtcactttgttaattgcaccttattcaattct |
7243839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 32 - 107
Target Start/End: Complemental strand, 7317801 - 7317726
Alignment:
| Q |
32 |
ctattgaggatatgtgtaatcgatatcattatcaaggttagttactcagttaattgcaccttattcaattctaaag |
107 |
Q |
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| T |
7317801 |
ctattgaggagatgtgtaatcgatatcattaccaaggtttgttacttagttaattgcacattattcaattctaaag |
7317726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 22766609 - 22766536
Alignment:
| Q |
25 |
cttaacactattgaggatatgtgtaatcgatatcattatcaaggttagttactcagttaattgcaccttattca |
98 |
Q |
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| T |
22766609 |
cttaacaccattgaggagatgtgtaatcgatgtcattatcaaggttagttacttggtaaattacaccttattca |
22766536 |
T |
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