View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_712 (Length: 214)

Name: NF10145A_low_712
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_712
NF10145A_low_712
[»] chr1 (8 HSPs)
chr1 (9-177)||(17560737-17560905)
chr1 (10-161)||(4366475-4366626)
chr1 (20-153)||(39379049-39379182)
chr1 (23-151)||(4570879-4571007)
chr1 (12-140)||(10218926-10219054)
chr1 (13-140)||(21855384-21855511)
chr1 (76-162)||(4014944-4015030)
chr1 (13-54)||(4016859-4016900)
[»] chr7 (15 HSPs)
chr7 (11-162)||(29874450-29874602)
chr7 (12-153)||(29859395-29859536)
chr7 (8-162)||(29921972-29922126)
chr7 (20-162)||(29867188-29867327)
chr7 (20-162)||(29881205-29881347)
chr7 (40-155)||(29454089-29454204)
chr7 (71-162)||(29430980-29431071)
chr7 (71-155)||(14076678-14076762)
chr7 (71-155)||(14386706-14386790)
chr7 (76-155)||(660833-660912)
chr7 (95-163)||(19351047-19351115)
chr7 (69-121)||(29106812-29106864)
chr7 (69-121)||(29899372-29899424)
chr7 (23-121)||(29445676-29445774)
chr7 (95-155)||(18514773-18514833)
[»] chr4 (8 HSPs)
chr4 (20-152)||(3557675-3557807)
chr4 (13-152)||(3565686-3565825)
chr4 (20-162)||(3560937-3561079)
chr4 (71-141)||(53774840-53774910)
chr4 (71-155)||(11970968-11971052)
chr4 (13-54)||(1686372-1686413)
chr4 (79-140)||(53430100-53430161)
chr4 (71-160)||(11981664-11981753)
[»] chr3 (1 HSPs)
chr3 (9-162)||(3625672-3625825)
[»] chr5 (2 HSPs)
chr5 (13-140)||(24330900-24331027)
chr5 (10-139)||(29597554-29597683)
[»] chr2 (1 HSPs)
chr2 (95-162)||(14514924-14514991)
[»] chr6 (3 HSPs)
chr6 (71-142)||(6921349-6921420)
chr6 (76-153)||(6935206-6935283)
chr6 (71-155)||(20770650-20770734)


Alignment Details
Target: chr1 (Bit Score: 133; Significance: 2e-69; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 9 - 177
Target Start/End: Complemental strand, 17560905 - 17560737
Alignment:
Q  9 agaaccaactattggtgtgttgggggactgtctttgtttttcttatcgttaaaaggcaagtgatttggttatatggcacgtgaagaaatttggggttgaa 108  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| |||| |||| ||  |||||||||||||||||| ||||||||||||||||||||    
T  17560905 agaaccaacttttggtgtgttgggggactgtctttgtttttcttattgttacaaggaaatcgatttggttatatggcacatgaagaaatttggggttgaa 17560806  T
Q  109 gattcttggactccattccttagaattagttataacgatcttcaaattgattatagctatgatggttat 177  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  17560805 gattcttggacaccattccttataattagttataacgatcttcaaattgattatagctatgatggttat 17560737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 10 - 161
Target Start/End: Complemental strand, 4366626 - 4366475
Alignment:
Q  10 gaaccaactattggtgtgttgggggactgtctttgtttttcttatcgttaaaaggcaagtgatttggttatatggcacgtgaagaaatttggggttgaag 109  Q
    ||||||||  ||||||||||||||||||| |||||||||||||||  ||| |||  || |||||| ||| |||||||  |||||||||| ||||||||||    
T  4366626 gaaccaacagttggtgtgttgggggactgcctttgtttttcttattcttacaagaaaactgattttgttttatggcagatgaagaaattcggggttgaag 4366527  T
Q  110 attcttggactccattccttagaattagttataacgatcttcaaattgatta 161  Q
    | |||||||||||||| |||| | |||||||  |  |||||||||| |||||    
T  4366526 agtcttggactccatttcttaaagttagttaccagaatcttcaaatagatta 4366475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 39379182 - 39379049
Alignment:
Q  20 ttggtgtgttgggggactgtctttgtttttcttatcgttaaaaggcaagtgatttggttatatggcacgtgaagaaatttggggttgaagattcttggac 119  Q
    ||||||||||||| ||||||||||||||||||||| |||| |    || ||||||  ||||||||||  ||||| |||||||||||||||| ||||||||    
T  39379182 ttggtgtgttgggtgactgtctttgtttttcttattgttacagaaaaactgattttattatatggcagatgaaggaatttggggttgaagagtcttggac 39379083  T
Q  120 tccattccttagaattagttataacgatcttcaa 153  Q
    || ||| |||| ||| |||||| | |||||||||    
T  39379082 tcaatttcttaaaatcagttatcatgatcttcaa 39379049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 23 - 151
Target Start/End: Original strand, 4570879 - 4571007
Alignment:
Q  23 gtgtgttgggggactgtctttgtttttcttatcgttaaaaggcaagtgatttggttatatggcacgtgaagaaatttggggttgaagattcttggactcc 122  Q
    |||||||||| | ||| |||||||||||||||    | | || || |||||| |||||||||||  |||||||||||||||||||||||||||||||||     
T  4570879 gtgtgttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactca 4570978  T
Q  123 attccttagaattagttataacgatcttc 151  Q
    ||| |||| |||||||||||  |||||||    
T  4570979 attgcttaaaattagttatagtgatcttc 4571007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 12 - 140
Target Start/End: Original strand, 10218926 - 10219054
Alignment:
Q  12 accaactattggtgtgttgggggactgtctttgtttttcttatcgttaaaaggcaagtgatttggttatatggcacgtgaagaaatttggggttgaagat 111  Q
    |||||||||||||||||||||||  || ||||||||||||| |    | |||| || |||||| ||| |||||||  |||||||||||||| ||||||||    
T  10218926 accaactattggtgtgttggggggttgcctttgtttttcttttttgcacaaggaaactgattttgttgtatggcaaatgaagaaatttgggattgaagat 10219025  T
Q  112 tcttggactccattccttagaattagtta 140  Q
    |||||||||| ||| |||| |||||||||    
T  10219026 tcttggactcaattacttaaaattagtta 10219054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 21855511 - 21855384
Alignment:
Q  13 ccaactattggtgtgttgggggactgtctttgtttttcttatcgttaaaaggcaagtgatttggttatatggcacgtgaagaaatttggggttgaagatt 112  Q
    |||||||||||||| ||| ||| ||||||||||||||| |||   || |||| ||  ||||| ||||||||| |  ||||| ||||||||||||||||||    
T  21855511 ccaactattggtgtattgaggggctgtctttgtttttcatattcgtacaaggaaaccgattttgttatatgggagatgaaggaatttggggttgaagatt 21855412  T
Q  113 cttggactccattccttagaattagtta 140  Q
    ||||||||| | |||||| | |||||||    
T  21855411 cttggactcaactccttaaagttagtta 21855384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 76 - 162
Target Start/End: Complemental strand, 4015030 - 4014944
Alignment:
Q  76 gttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaaattgattat 162  Q
    |||||||||||  ||||||||||||||||||||||||||||||||| |||||||| | |||||||  | ||||||| ||| ||||||    
T  4015030 gttatatggcagatgaagaaatttggggttgaagattcttggactcaattccttaaagttagttaccatgatcttctaatagattat 4014944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 4016900 - 4016859
Alignment:
Q  13 ccaactattggtgtgttgggggactgtctttgtttttcttat 54  Q
    ||||||||| |||||||||||| ||| |||||||||||||||    
T  4016900 ccaactattagtgtgttggggggctgcctttgtttttcttat 4016859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 11 - 162
Target Start/End: Original strand, 29874450 - 29874602
Alignment:
Q  11 aaccaactattggtgtgttgggg-gactgtctttgtttttcttatcgttaaaaggcaagtgatttggttatatggcacgtgaagaaatttggggttgaag 109  Q
    |||||| ||| |||||||||||| ||||||||||||||||||||| |||| |||| || ||||||  ||||||||||  |||||||||||||||||||||    
T  29874450 aaccaaatataggtgtgttggggcgactgtctttgtttttcttattgttacaaggaaactgatttcattatatggcaaatgaagaaatttggggttgaag 29874549  T
Q  110 attcttggactccattccttagaattagttataacgatcttcaaattgattat 162  Q
    |||||||||||||||| |||| |||||||||| |  |||||||||||||||||    
T  29874550 attcttggactccattacttaaaattagttatcaaaatcttcaaattgattat 29874602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 153
Target Start/End: Original strand, 29859395 - 29859536
Alignment:
Q  12 accaactattggtgtgttgggggactgtctttgtttttcttatcgttaaaaggcaagtgatttggttatatggcacgtgaagaaatttggggttgaagat 111  Q
    |||||||||||||||||||||||||  |||||||||||||||| |||| |||| || |||||| ||||||||| |  ||||||||||||| |||||||||    
T  29859395 accaactattggtgtgttgggggaccatctttgtttttcttattgttacaaggaaattgatttcgttatatgggagatgaagaaatttggagttgaagat 29859494  T
Q  112 tcttggactccattccttagaattagttataacgatcttcaa 153  Q
    |||||||| ||||| |||| |||||||||| || ||||||||    
T  29859495 tcttggaccccatttcttaaaattagttatcacaatcttcaa 29859536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 29922126 - 29921972
Alignment:
Q  8 cagaaccaactattggtgtgttgggggactgtctttgtttttcttatcgttaaaaggcaagtgatttggttatatggcacgtgaagaaatttggggttga 107  Q
    ||||||||||  ||||||||||||||| ||| |||||||||||||||  ||| || | || |||||| |||||||||||  ||||||||||||||| |||    
T  29922126 cagaaccaaccgttggtgtgttggggggctgcctttgtttttcttatgcttacaaagaaactgattttgttatatggcagatgaagaaatttggggatga 29922027  T
Q  108 agattcttggactccattccttagaattagttataacgatcttcaaattgattat 162  Q
    |||||||||| ||| ||||||||||||||||||| |  |||||| ||| ||||||    
T  29922026 agattcttggtctcaattccttagaattagttatcaaaatcttctaatagattat 29921972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 29867188 - 29867327
Alignment:
Q  20 ttggtgtgttgggggactgtctttgtttttcttatcgttaaaaggcaagtgatttggttatatggcacgtgaagaaatttggggttgaagattcttggac 119  Q
    ||||||||||||||||||| |||||||||||||||  |   |||| || ||||||  ||||||||||  |||||||||| ||||||||||||||||||||    
T  29867188 ttggtgtgttgggggactgcctttgtttttcttattct---aaggaaactgattttattatatggcaaatgaagaaattcggggttgaagattcttggac 29867284  T
Q  120 tccattccttagaattagttataacgatcttcaaattgattat 162  Q
    || ||||||||||||||||||  |  |||||||||||||||||    
T  29867285 tcaattccttagaattagttaccataatcttcaaattgattat 29867327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 29881205 - 29881347
Alignment:
Q  20 ttggtgtgttgggggactgtctttgtttttcttatcgttaaaaggcaagtgatttggttatatggcacgtgaagaaatttggggttgaagattcttggac 119  Q
    |||||||||||| |||||| ||||| |||| |||| |||| |||| || ||||||  || | |||||  |||||||||||||||||||||||||||||||    
T  29881205 ttggtgtgttggaggactgcctttgcttttgttattgttacaaggaaactgattttattgtttggcaaatgaagaaatttggggttgaagattcttggac 29881304  T
Q  120 tccattccttagaattagttataacgatcttcaaattgattat 162  Q
    || ||||||||||||||||||  |   ||||||||||||||||    
T  29881305 tcaattccttagaattagttaccatagtcttcaaattgattat 29881347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 40 - 155
Target Start/End: Complemental strand, 29454204 - 29454089
Alignment:
Q  40 ctttgtttttcttatcgttaaaaggcaagtgatttggttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagtt 139  Q
    |||||||||||||||  ||| |||| |   ||||| ||||||||||   ||| ||||||||| ||||||||||||||||||| |||| ||| ||||||||    
T  29454204 ctttgtttttcttattcttacaaggaacccgattttgttatatggcggatgatgaaatttggagttgaagattcttggactcaattctttaaaattagtt 29454105  T
Q  140 ataacgatcttcaaat 155  Q
    || | |||||||||||    
T  29454104 atcaagatcttcaaat 29454089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 71 - 162
Target Start/End: Complemental strand, 29431071 - 29430980
Alignment:
Q  71 atttggttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaaattgattat 162  Q
    |||| ||||||||||   ||| ||||||||||| | ||||||||||||| | |||||||| |||||||||| | ||||||||||| ||||||    
T  29431071 attttgttatatggcggatgatgaaatttggggctaaagattcttggacccaattccttaaaattagttatcaggatcttcaaatagattat 29430980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 14076678 - 14076762
Alignment:
Q  71 atttggttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaaat 155  Q
    |||| |||||||||||  ||||| ||||||| |||||||| |||||||||| ||| |||| |||||||||| |  ||||||||||    
T  14076678 atttcgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttcaaat 14076762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 14386706 - 14386790
Alignment:
Q  71 atttggttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaaat 155  Q
    |||| |||||||||||  ||||| ||||||| |||||||| |||||||||| ||| |||| |||||||||| |  ||||||||||    
T  14386706 atttcgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttcaaat 14386790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 155
Target Start/End: Complemental strand, 660912 - 660833
Alignment:
Q  76 gttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaaat 155  Q
    |||||||||||  ||||| ||||| | |||||||| |||||||||| |||||||| |||||||||| |  ||||||||||    
T  660912 gttatatggcagatgaaggaatttcgagttgaagagtcttggactcaattccttaaaattagttatcataatcttcaaat 660833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 163
Target Start/End: Complemental strand, 19351115 - 19351047
Alignment:
Q  95 aatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaaattgattata 163  Q
    ||||||| ||||| || ||||||||||||||||| | |||||||| | | |||||||| ||||||||||    
T  19351115 aatttggagttgaggagtcttggactccattcctcaaaattagttttcaggatcttcacattgattata 19351047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 29106812 - 29106864
Alignment:
Q  69 tgatttggttatatggcacgtgaagaaatttggggttgaagattcttggactc 121  Q
    |||||| ||| |||||||  |||||||||||||||||||||| ||||||||||    
T  29106812 tgattttgttgtatggcagatgaagaaatttggggttgaagagtcttggactc 29106864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 29899372 - 29899424
Alignment:
Q  69 tgatttggttatatggcacgtgaagaaatttggggttgaagattcttggactc 121  Q
    |||||| |||||||||||  |||||||||||||||||||||| || |||||||    
T  29899372 tgattttgttatatggcagatgaagaaatttggggttgaagagtcctggactc 29899424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 29445774 - 29445676
Alignment:
Q  23 gtgtgttgggggactgtctttgtttttcttatcgttaaaaggcaagtgatttggttatatggcacgtgaagaaatttggggttgaagattcttggactc 121  Q
    |||||||||||| ||  ||||||| |||||||  ||| |||| ||  |||||  ||||||||||  ||||| |||| ||||||||||| ||||||||||    
T  29445774 gtgtgttggggggcttcctttgttgttcttatttttacaaggaaaccgattttcttatatggcagatgaaggaattaggggttgaagactcttggactc 29445676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 155
Target Start/End: Complemental strand, 18514833 - 18514773
Alignment:
Q  95 aatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaaat 155  Q
    ||||||| |||||| | |||||||||| |||||||| |||||||||||   ||||||||||    
T  18514833 aatttggagttgaaaactcttggactcaattccttaaaattagttatatgaatcttcaaat 18514773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 20 - 152
Target Start/End: Original strand, 3557675 - 3557807
Alignment:
Q  20 ttggtgtgttgggggactgtctttgtttttcttatcgttaaaaggcaagtgatttggttatatggcacgtgaagaaatttggggttgaagattcttggac 119  Q
    ||||||||||| |||||||||||||||||||||||  ||| |||| ||  |||||  ||||||||||  ||||| |||||||||||||||| ||||||||    
T  3557675 ttggtgtgttgagggactgtctttgtttttcttattcttacaaggaaaccgattttattatatggcatatgaaggaatttggggttgaagagtcttggac 3557774  T
Q  120 tccattccttagaattagttataacgatcttca 152  Q
    || ||| |||| |||||||||| | ||||||||    
T  3557775 tcaatttcttaaaattagttatcatgatcttca 3557807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 13 - 152
Target Start/End: Original strand, 3565686 - 3565825
Alignment:
Q  13 ccaactattggtgtgttgggggactgtctttgtttttcttatcgttaaaaggcaagtgatttggttatatggcacgtgaagaaatttggggttgaagatt 112  Q
    |||||| ||||||||||| ||||||| ||||||||||||||| |||| |||  ||  |||||  ||||||||||  ||||| |||||||||||||||| |    
T  3565686 ccaactgttggtgtgttgagggactgcctttgtttttcttattgttataagaaaaccgattttattatatggcagatgaaggaatttggggttgaagagt 3565785  T
Q  113 cttggactccattccttagaattagttataacgatcttca 152  Q
    ||||||||| ||| |||| |||||||||| | ||||||||    
T  3565786 cttggactcaatttcttaaaattagttatcatgatcttca 3565825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 162
Target Start/End: Complemental strand, 3561079 - 3560937
Alignment:
Q  20 ttggtgtgttgggggactgtctttgtttttcttatcgttaaaaggcaagtgatttggttatatggcacgtgaagaaatttggggttgaagattcttggac 119  Q
    ||||||| |||||||| || |||||||||||||||  ||| |||| ||  |||||  |||| |||||  |||| ||||||||||||||||| ||||||||    
T  3561079 ttggtgtcttgggggattgcctttgtttttcttattcttacaaggaaaccgattttattatttggcagatgaaaaaatttggggttgaagagtcttggac 3560980  T
Q  120 tccattccttagaattagttataacgatcttcaaattgattat 162  Q
    || ||| |||| |||||||||| | ||||||||| | ||||||    
T  3560979 tcaatttcttaaaattagttatcatgatcttcaattagattat 3560937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 53774840 - 53774910
Alignment:
Q  71 atttggttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagttat 141  Q
    |||| |||||||||||  ||||| ||||||| |||||||| |||||||||| |||||||| ||||||||||    
T  53774840 attttgttatatggcaaatgaaggaatttggagttgaagagtcttggactcaattccttaaaattagttat 53774910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 155
Target Start/End: Complemental strand, 11971052 - 11970968
Alignment:
Q  71 atttggttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaaat 155  Q
    |||| |||||||||||  ||||| ||||||| || ||||| |||||||||| ||| ||||||||||||||| |  ||||||||||    
T  11971052 attttgttatatggcaaatgaaggaatttggagtggaagagtcttggactcaatttcttagaattagttatcataatcttcaaat 11970968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 1686413 - 1686372
Alignment:
Q  13 ccaactattggtgtgttgggggactgtctttgtttttcttat 54  Q
    |||||| ||||||||||||||||||| |||||||||||||||    
T  1686413 ccaactgttggtgtgttgggggactgcctttgtttttcttat 1686372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 140
Target Start/End: Complemental strand, 53430161 - 53430100
Alignment:
Q  79 atatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagtta 140  Q
    ||||||||  ||||||||| |||||  |||||||||||||||| |||||||| |||||||||    
T  53430161 atatggcagatgaagaaatatggggccgaagattcttggactcaattccttaaaattagtta 53430100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 160
Target Start/End: Complemental strand, 11981753 - 11981664
Alignment:
Q  71 atttggttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaaattgatt 160  Q
    |||| |||||||||||  ||||| ||||||| || ||||| || ||||||| ||| |||| ||||||||||    |||||||||||||||    
T  11981753 attttgttatatggcaaatgaaggaatttggagtggaagagtcctggactcgatttcttaaaattagttatcttaatcttcaaattgatt 11981664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 9 - 162
Target Start/End: Original strand, 3625672 - 3625825
Alignment:
Q  9 agaaccaactattggtgtgttgggggactgtctttgtttttcttatcgttaaaaggcaagtgatttggttatatggcacgtgaagaaatttggggttgaa 108  Q
    |||||||| | ||||||||||||||||||| |||||||||||||||  ||| |||| ||   || |  ||||||||||  ||||||||||||||||||||    
T  3625672 agaaccaaatgttggtgtgttgggggactgcctttgtttttcttattcttacaaggtaacctatcttattatatggcaaatgaagaaatttggggttgaa 3625771  T
Q  109 gattcttggactccattccttagaattagttataacgatcttcaaattgattat 162  Q
    || |||||||||| ||| |||| |||||||||| |  |||||||| | ||||||    
T  3625772 gagtcttggactcaatttcttaaaattagttatcaaaatcttcaattagattat 3625825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 24331027 - 24330900
Alignment:
Q  13 ccaactattggtgtgttgggggactgtctttgtttttcttatcgttaaaaggcaagtgatttggttatatggcacgtgaagaaatttggggttgaagatt 112  Q
    |||||||||||||| ||| ||| ||||||||||||||| |||   || |||| ||  ||||| ||||||||| |  ||||| ||||||||||||||||||    
T  24331027 ccaactattggtgtattgaggggctgtctttgtttttcatattcgtacaaggaaaccgattttgttatatgggagatgaaggaatttggggttgaagatt 24330928  T
Q  113 cttggactccattccttagaattagtta 140  Q
    ||||||||| | |||||| | |||||||    
T  24330927 cttggactcaactccttaaagttagtta 24330900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 139
Target Start/End: Complemental strand, 29597683 - 29597554
Alignment:
Q  10 gaaccaactattggtgtgttgggggactgtctttgtttttcttatcgttaaaaggcaagtgatttggttatatggcacgtgaagaaatttggggttgaag 109  Q
    ||||||||||||| ||| |||  |||| | |||||||||||| | | ||  |||| || | |||| |||||||||||  |||   ||||||| ||||||     
T  29597683 gaaccaactattgctgttttgctggaccgcctttgtttttctcaccatttcaaggaaactcattttgttatatggcaaatgattgaatttggagttgaac 29597584  T
Q  110 attcttggactccattccttagaattagtt 139  Q
    | |||||||||| |||||||| ||||||||    
T  29597583 aatcttggactcaattccttaaaattagtt 29597554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 14514924 - 14514991
Alignment:
Q  95 aatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaaattgattat 162  Q
    ||||||| ||||||||||||||||||| |||||||| |||||||||||   |||||||||| ||||||    
T  14514924 aatttggagttgaagattcttggactcaattccttaaaattagttatatgaatcttcaaatagattat 14514991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 142
Target Start/End: Complemental strand, 6921420 - 6921349
Alignment:
Q  71 atttggttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagttata 142  Q
    |||| ||||| |||||  ||||| ||||||| |||||||| |||||||||| |||||||| |||||||||||    
T  6921420 attttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttata 6921349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 76 - 153
Target Start/End: Complemental strand, 6935283 - 6935206
Alignment:
Q  76 gttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaa 153  Q
    ||||| |||||  ||||| ||||||| ||| |||| |||||||||  |||||||| ||||||||||| | ||||||||    
T  6935283 gttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttataccaatcttcaa 6935206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 20770650 - 20770734
Alignment:
Q  71 atttggttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaaat 155  Q
    |||| |||||||||||  ||||| |||||||  ||||||| || |||| || |||||||| |||||||||| |  ||||||||||    
T  20770650 attttgttatatggcaaatgaaggaatttggaattgaagagtcatggattcaattccttaaaattagttatcataatcttcaaat 20770734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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