View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_715 (Length: 214)

Name: NF10145A_low_715
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_715
NF10145A_low_715
[»] scaffold0179 (2 HSPs)
scaffold0179 (1-116)||(7655-7770)
scaffold0179 (1-116)||(12589-12704)
[»] chr3 (6 HSPs)
chr3 (1-116)||(26845994-26846109)
chr3 (4-116)||(47537398-47537510)
chr3 (4-115)||(50544354-50544465)
chr3 (7-113)||(48191932-48192038)
chr3 (7-94)||(33121237-33121324)
chr3 (36-80)||(19222260-19222304)
[»] chr5 (4 HSPs)
chr5 (1-116)||(20208617-20208732)
chr5 (9-116)||(6049358-6049465)
chr5 (1-116)||(7000663-7000778)
chr5 (7-113)||(4415601-4415707)
[»] chr1 (6 HSPs)
chr1 (1-116)||(26720788-26720903)
chr1 (4-116)||(47106579-47106690)
chr1 (20-115)||(10711060-10711155)
chr1 (7-113)||(17708112-17708218)
chr1 (9-110)||(30110829-30110930)
chr1 (4-115)||(21335269-21335379)
[»] chr6 (6 HSPs)
chr6 (4-116)||(17873716-17873828)
chr6 (20-114)||(11060759-11060853)
chr6 (9-116)||(18051347-18051454)
chr6 (9-116)||(17079089-17079196)
chr6 (19-113)||(9199153-9199247)
chr6 (31-84)||(4474855-4474908)
[»] chr4 (8 HSPs)
chr4 (4-116)||(10563207-10563319)
chr4 (4-116)||(53780175-53780287)
chr4 (9-116)||(20395731-20395838)
chr4 (7-113)||(34322220-34322326)
chr4 (19-113)||(42778383-42778477)
chr4 (7-113)||(53486854-53486960)
chr4 (7-113)||(30273713-30273819)
chr4 (18-113)||(18106457-18106552)
[»] scaffold0007 (1 HSPs)
scaffold0007 (9-116)||(182264-182371)
[»] chr8 (3 HSPs)
chr8 (4-116)||(23680292-23680404)
chr8 (4-106)||(45255736-45255838)
chr8 (9-114)||(17658966-17659071)
[»] chr7 (3 HSPs)
chr7 (4-116)||(7458569-7458681)
chr7 (4-116)||(4077405-4077517)
chr7 (7-113)||(34231832-34231938)
[»] chr2 (2 HSPs)
chr2 (19-113)||(1380227-1380321)
chr2 (18-113)||(2999649-2999744)


Alignment Details
Target: scaffold0179 (Bit Score: 116; Significance: 3e-59; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 7655 - 7770
Alignment:
Q  1 tcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7655 tcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaa 7754  T
Q  101 catcagtcaataaagc 116  Q
    ||||||||||||||||    
T  7755 catcagtcaataaagc 7770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 12589 - 12704
Alignment:
Q  1 tcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12589 tcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaa 12688  T
Q  101 catcagtcaataaagc 116  Q
    ||||||||||||||||    
T  12689 catcagtcaataaagc 12704  T

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Target: chr3 (Bit Score: 116; Significance: 3e-59; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 26845994 - 26846109
Alignment:
Q  1 tcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26845994 tcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaa 26846093  T
Q  101 catcagtcaataaagc 116  Q
    ||||||||||||||||    
T  26846094 catcagtcaataaagc 26846109  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 116
Target Start/End: Original strand, 47537398 - 47537510
Alignment:
Q  4 tttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacat 103  Q
    |||| ||||| ||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||| || || ||||| ||||||    
T  47537398 tttgtagtcagcaagtgatatgaaccacgaacagtgtaaccctcaacagggtctggcaaccacacccacctgtctaaaacaaaatctagcagaaaaacat 47537497  T
Q  104 cagtcaataaagc 116  Q
    |||||||||||||    
T  47537498 cagtcaataaagc 47537510  T

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Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 50544354 - 50544465
Alignment:
Q  4 tttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacat 103  Q
    |||| |||||||||  |||||||||||||||| | |||||||||| ||||||| |||| ||||||||| |||||||||||| |  |||||||||||||||    
T  50544354 tttgtagtcaacaatagataagaaccgcgaactgagtaaccctcaccagggtctggcagccacacccatctgtctgaaacaaattcttgcagagaaacat 50544453  T
Q  104 cagtcaataaag 115  Q
    ||||||||||||    
T  50544454 cagtcaataaag 50544465  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 113
Target Start/End: Original strand, 48191932 - 48192038
Alignment:
Q  7 gaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcag 106  Q
    ||||||| || |||||| ||||| ||||||| ||||||| | | |||||| || ||||||||||||||||| |||||| || |||||| |||||||||||    
T  48191932 gaagtcagcatgtgatatgaaccacgaacagagtaacccaccaaagggtctggaaaccacacccacctgtcggaaacaaaatcttgcaaagaaacatcag 48192031  T
Q  107 tcaataa 113  Q
    |||||||    
T  48192032 tcaataa 48192038  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 94
Target Start/End: Complemental strand, 33121324 - 33121237
Alignment:
Q  7 gaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgca 94  Q
    ||||||| || |||||| ||||| ||||||| ||||||| | | |||||| |||||||||||||||||||| |||||| || ||||||    
T  33121324 gaagtcagcatgtgatatgaaccacgaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaatcttgca 33121237  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 19222304 - 19222260
Alignment:
Q  36 agtgtaaccctcaacagggtcaggcaaccacacccacctgtctga 80  Q
    |||| |||||||||||||||| |||||||||||||||||||||||    
T  19222304 agtgcaaccctcaacagggtctggcaaccacacccacctgtctga 19222260  T

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Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 20208732 - 20208617
Alignment:
Q  1 tcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  20208732 tcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtctggcaaccacacccacctgtctgaaacataaacttgcagagaaa 20208633  T
Q  101 catcagtcaataaagc 116  Q
    ||||||||||||||||    
T  20208632 catcagtcaataaagc 20208617  T

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Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 6049358 - 6049465
Alignment:
Q  9 agtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcagtc 108  Q
    ||||| ||||||||| |||||||||||||| ||||||| ||||||||| |||||||||||||||||||| |||| | || |||||| |||||||||||||    
T  6049358 agtcagcaagtgatatgaaccgcgaacagtataacccttaacagggtctggcaaccacacccacctgtcggaaaaaaaatcttgcaaagaaacatcagtc 6049457  T
Q  109 aataaagc 116  Q
    ||||||||    
T  6049458 aataaagc 6049465  T

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Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 7000778 - 7000663
Alignment:
Q  1 tcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaa 100  Q
    |||||||  |||| |||| |||| ||||||||||||||||||||||||   ||||| ||||||||||||||| |||||||||||||| || |||||||||    
T  7000778 tcatttgtggtcagcaagcgatatgaaccgcgaacagtgtaaccctcagtggggtctggcaaccacacccacttgtctgaaacagaatctagcagagaaa 7000679  T
Q  101 catcagtcaataaagc 116  Q
    ||||| ||||||||||    
T  7000678 catcaatcaataaagc 7000663  T

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Target: chr5; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 7 - 113
Target Start/End: Complemental strand, 4415707 - 4415601
Alignment:
Q  7 gaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcag 106  Q
    |||||||||| || ||| ||||| ||||||| ||||||| | | |||||| |||||||||||||||||||| |||||| || |||||| |||||||||||    
T  4415707 gaagtcaacatgtaatatgaaccacgaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaatcttgcaaagaaacatcag 4415608  T
Q  107 tcaataa 113  Q
    |||||||    
T  4415607 tcaataa 4415601  T

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Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 26720788 - 26720903
Alignment:
Q  1 tcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||| |||||||||||||||    
T  26720788 tcatttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtctgacgaccacacccacctgtctgaaacaaaaacttgcagagaaa 26720887  T
Q  101 catcagtcaataaagc 116  Q
    ||||||||||||||||    
T  26720888 catcagtcaataaagc 26720903  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 4 - 116
Target Start/End: Complemental strand, 47106690 - 47106579
Alignment:
Q  4 tttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacat 103  Q
    |||| ||||| ||||||||| ||||||||||||||  | |||||||||||||| |||||||||||||||||||| |||||| || |||||| ||||||||    
T  47106690 tttgtagtcagcaagtgatatgaaccgcgaacagta-acccctcaacagggtctggcaaccacacccacctgtcggaaacaaaatcttgcaaagaaacat 47106592  T
Q  104 cagtcaataaagc 116  Q
    |||||||||||||    
T  47106591 cagtcaataaagc 47106579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 10711155 - 10711060
Alignment:
Q  20 gataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcagtcaataaag 115  Q
    |||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||| | |||||||||||| |||||||    
T  10711155 gatatgaaccacgaacagtgtaaccctcaacagggtctggcaaccacacccacctgtctgaaacaaaatcttggaaagaaacatcagttaataaag 10711060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 7 - 113
Target Start/End: Original strand, 17708112 - 17708218
Alignment:
Q  7 gaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcag 106  Q
    ||||||| || |||||| ||||| ||||||| ||||||| ||| |||||  |||||||||||||| |||||||||||| || |||||| |||||||||||    
T  17708112 gaagtcagcatgtgatatgaaccacgaacagagtaacccacaaaagggtttggcaaccacacccatctgtctgaaacaaaatcttgcaaagaaacatcag 17708211  T
Q  107 tcaataa 113  Q
    |||||||    
T  17708212 tcaataa 17708218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 30110930 - 30110829
Alignment:
Q  9 agtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcagtc 108  Q
    ||||| || |||||| ||||| ||||| ||||| ||||||| |||||| || |||||||||||||| ||||||||| || |||| |||||||||||||||    
T  30110930 agtcagcatgtgatatgaaccccgaactgtgtacccctcaaaagggtctggtaaccacacccacctatctgaaacaaaatcttgtagagaaacatcagtc 30110831  T
Q  109 aa 110  Q
    ||    
T  30110830 aa 30110829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 115
Target Start/End: Complemental strand, 21335379 - 21335269
Alignment:
Q  4 tttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacat 103  Q
    |||| |||||||| ||||||||| |||||||| | ||| || |||| ||||||  ||||||| ||||||||||||||||||  | | |||| ||||||||    
T  21335379 tttgtagtcaacaggtgataaga-ccgcgaactgagtacccttcaaaagggtcctgcaaccatacccacctgtctgaaacattagcctgcaaagaaacat 21335281  T
Q  104 cagtcaataaag 115  Q
    ||  ||||||||    
T  21335280 caagcaataaag 21335269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 4e-43; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 4 - 116
Target Start/End: Complemental strand, 17873828 - 17873716
Alignment:
Q  4 tttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacat 103  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||| || ||||||||||||||||||||||||||| || |||||||||||||||    
T  17873828 tttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacaaaatcttgcagagaaacat 17873729  T
Q  104 cagtcaataaagc 116  Q
    |||||||||||||    
T  17873728 cagtcaataaagc 17873716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 20 - 114
Target Start/End: Complemental strand, 11060853 - 11060759
Alignment:
Q  20 gataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcagtcaataaa 114  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| || || ||||||||| |||||||||||||    
T  11060853 gataagaaccgcgaacagtgtaaccctcaaaagggtcaggcaaccacacccacctgtcagaaacataatctagcagagaaatatcagtcaataaa 11060759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 116
Target Start/End: Complemental strand, 18051454 - 18051347
Alignment:
Q  9 agtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcagtc 108  Q
    ||||| || |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| | || |||||| | |||||| ||||    
T  18051454 agtcaccatgtgataagaaccacgaacagtgtaaccctcaacagggtcagacaaccacacccacctgtctgaaataaaatcttgcaaataaacattagtc 18051355  T
Q  109 aataaagc 116  Q
    ||||||||    
T  18051354 aataaagc 18051347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 9 - 116
Target Start/End: Complemental strand, 17079196 - 17079089
Alignment:
Q  9 agtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcagtc 108  Q
    ||||| || |||||| ||||| |||||||| |||||||||||| |||| ||||||||||||||| ||||||||||| || |||||| |||||||||||||    
T  17079196 agtcagcatgtgatatgaaccacgaacagtataaccctcaacaaggtctggcaaccacacccacttgtctgaaacaaaatcttgcaaagaaacatcagtc 17079097  T
Q  109 aataaagc 116  Q
    ||||||||    
T  17079096 aataaagc 17079089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 9199247 - 9199153
Alignment:
Q  19 tgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcagtcaataa 113  Q
    ||||| ||||||||||||| ||||||| ||| | |||| |||||||| ||||||||||||||||||||| || ||| ||||||||||||||||||    
T  9199247 tgatatgaaccgcgaacagagtaacccacaatatggtctggcaaccaaacccacctgtctgaaacagaatctcgcaaagaaacatcagtcaataa 9199153  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 4474855 - 4474908
Alignment:
Q  31 cgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaaca 84  Q
    |||||||| |||||| | ||||||||||  ||||||||||| ||||||||||||    
T  4474855 cgaacagtataaccccccacagggtcagataaccacacccatctgtctgaaaca 4474908  T

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Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 4 - 116
Target Start/End: Complemental strand, 10563319 - 10563207
Alignment:
Q  4 tttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacat 103  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||| || ||||||||||||||||||||| ||||| || |||||||||||||||    
T  10563319 tttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctaaaacaaaatcttgcagagaaacat 10563220  T
Q  104 cagtcaataaagc 116  Q
    |||||||||||||    
T  10563219 cagtcaataaagc 10563207  T

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Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 4 - 116
Target Start/End: Original strand, 53780175 - 53780287
Alignment:
Q  4 tttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacat 103  Q
    |||||||||||||||||||| |||||||||||||||||||||| || ||| || ||||||||||||||||||||||||||| || |||||||||||||||    
T  53780175 tttgaagtcaacaagtgatatgaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacaaaatcttgcagagaaacat 53780274  T
Q  104 cagtcaataaagc 116  Q
    |||||||||||||    
T  53780275 cagtcaataaagc 53780287  T

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Target: chr4; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 20395731 - 20395838
Alignment:
Q  9 agtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcagtc 108  Q
    ||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||    
T  20395731 agtcagcatgtgataagaaccacgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtc 20395830  T
Q  109 aataaagc 116  Q
    ||||||||    
T  20395831 aataaagc 20395838  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 7 - 113
Target Start/End: Complemental strand, 34322326 - 34322220
Alignment:
Q  7 gaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcag 106  Q
    ||||||| || |||||| ||||| ||||||| ||||||| | | |||||| |||||||||||||||||||| |||||| || |||||| |||||||||||    
T  34322326 gaagtcagcatgtgatatgaaccacgaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaatcttgcaaagaaacatcag 34322227  T
Q  107 tcaataa 113  Q
    |||||||    
T  34322226 tcaataa 34322220  T

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Target: chr4; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 42778383 - 42778477
Alignment:
Q  19 tgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcagtcaataa 113  Q
    ||||| ||||||||||||| ||||||| ||| ||| || |||||||| |||||||| |||||||||||| |||||| ||||||||||||||||||    
T  42778383 tgatatgaaccgcgaacagagtaacccacaataggatctggcaaccaaacccacctatctgaaacagaatcttgcaaagaaacatcagtcaataa 42778477  T

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Target: chr4; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 7 - 113
Target Start/End: Complemental strand, 53486960 - 53486854
Alignment:
Q  7 gaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcag 106  Q
    ||||||| || |||||| ||||| ||||||| ||||||| ||| |||||| ||||||||||| ||||||||||||||| || || ||| |||||||||||    
T  53486960 gaagtcagcatgtgatatgaaccacgaacagagtaacccacaatagggtctggcaaccacactcacctgtctgaaacaaaatctcgcaaagaaacatcag 53486861  T
Q  107 tcaataa 113  Q
    |||||||    
T  53486860 tcaataa 53486854  T

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Target: chr4; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 113
Target Start/End: Complemental strand, 30273819 - 30273713
Alignment:
Q  7 gaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcag 106  Q
    ||||||| || |||||| ||||| ||||||| ||||||| ||| |||||| ||||||||||||||||||||||||||| || |||||| | ||| ||||     
T  30273819 gaagtcagcatgtgatatgaaccacgaacagagtaacccacaaaagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaaaaaatatcaa 30273720  T
Q  107 tcaataa 113  Q
    |||||||    
T  30273719 tcaataa 30273713  T

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Target: chr4; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 18106552 - 18106457
Alignment:
Q  18 gtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcagtcaataa 113  Q
    |||||| |||||  |||||| ||||||| | | |||||| |||||||||||||||||||| |||||| || |||||| ||||||||||||||||||    
T  18106552 gtgatatgaaccaagaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaatcttgcaaagaaacatcagtcaataa 18106457  T

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Target: scaffold0007 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 182264 - 182371
Alignment:
Q  9 agtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcagtc 108  Q
    ||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||    
T  182264 agtcagcatgtgataagaaccacgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtc 182363  T
Q  109 aataaagc 116  Q
    ||||||||    
T  182364 aataaagc 182371  T

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Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 4 - 116
Target Start/End: Original strand, 23680292 - 23680404
Alignment:
Q  4 tttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacat 103  Q
    |||| ||||| || |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||| ||||||||    
T  23680292 tttgtagtcagcaggtgatatgaaccgcgaacagtgtaaccctcaacagggtctggcaaccacacccacctgtctgaaacagaatctagcaaagaaacat 23680391  T
Q  104 cagtcaataaagc 116  Q
    |||||||||||||    
T  23680392 cagtcaataaagc 23680404  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 4 - 106
Target Start/End: Complemental strand, 45255838 - 45255736
Alignment:
Q  4 tttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacat 103  Q
    |||| ||||| |||||||||||||||||||||||| || ||||||| |||||| ||||||||||||||||||||||||||| || |||||| ||||||||    
T  45255838 tttgtagtcagcaagtgataagaaccgcgaacagtatagccctcaatagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacat 45255739  T
Q  104 cag 106  Q
    |||    
T  45255738 cag 45255736  T

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Target: chr8; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 17658966 - 17659071
Alignment:
Q  9 agtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcagtc 108  Q
    |||||||||  |||| ||||| | ||||||||||||||||| ||||||| ||||||||||||||||||| |||||| || || |||||||||||||||||    
T  17658966 agtcaacaaacgatatgaaccacaaacagtgtaaccctcaatagggtcaagcaaccacacccacctgtcagaaacaaaatctagcagagaaacatcagtc 17659065  T
Q  109 aataaa 114  Q
    ||||||    
T  17659066 aataaa 17659071  T

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Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 4 - 116
Target Start/End: Complemental strand, 7458681 - 7458569
Alignment:
Q  4 tttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacat 103  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||| || |||||||||||||||||||| ||||||||| |||||||||||||||    
T  7458681 tttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtcggaaacagaatcttgcagagaaacat 7458582  T
Q  104 cagtcaataaagc 116  Q
     ||| ||||||||    
T  7458581 tagttaataaagc 7458569  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 116
Target Start/End: Original strand, 4077405 - 4077517
Alignment:
Q  4 tttgaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacat 103  Q
    |||| ||||||||||||||||||||||||||| || || |||||| |||||||  |||||||||||||||||||||| ||| || |||||| ||| ||||    
T  4077405 tttgtagtcaacaagtgataagaaccgcgaactgtatagccctcagcagggtctagcaaccacacccacctgtctgacacaaaatcttgcaaagacacat 4077504  T
Q  104 cagtcaataaagc 116  Q
    ||  |||||||||    
T  4077505 caaacaataaagc 4077517  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 7 - 113
Target Start/End: Original strand, 34231832 - 34231938
Alignment:
Q  7 gaagtcaacaagtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcag 106  Q
    ||||||| || |||||| ||||| ||||||| ||||||  | | |||||| |||||||||||||||||||| |||||| || |||||| ||||||||||     
T  34231832 gaagtcagcatgtgatatgaaccacgaacagagtaacctaccaaagggtctggcaaccacacccacctgtcggaaacaaaatcttgcaaagaaacatcat 34231931  T
Q  107 tcaataa 113  Q
    |||||||    
T  34231932 tcaataa 34231938  T

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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 1380227 - 1380321
Alignment:
Q  19 tgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcagtcaataa 113  Q
    ||||| ||||||||||||| ||||||| ||| ||| || |||||||| |||||||| ||||||||| || |||||| ||||||||||||||||||    
T  1380227 tgatatgaaccgcgaacagagtaacccacaataggatctggcaaccaaacccacctatctgaaacataatcttgcaaagaaacatcagtcaataa 1380321  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 2999744 - 2999649
Alignment:
Q  18 gtgataagaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcagtcaataa 113  Q
    |||||| |||||  |||||| ||||||| | | |||||| |||||||||||||||||||| |||||| || |||||| ||||||||||||||||||    
T  2999744 gtgatatgaaccaagaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaatcttgcaaagaaacatcagtcaataa 2999649  T

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