View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_720 (Length: 213)

Name: NF10145A_low_720
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_720
NF10145A_low_720
[»] chr6 (2 HSPs)
chr6 (46-194)||(21558688-21558836)
chr6 (80-157)||(21545417-21545497)
[»] chr7 (2 HSPs)
chr7 (48-85)||(8611809-8611846)
chr7 (48-92)||(28537009-28537053)
[»] chr3 (2 HSPs)
chr3 (48-81)||(15019778-15019811)
chr3 (48-85)||(42490037-42490074)
[»] chr1 (1 HSPs)
chr1 (48-89)||(29361492-29361533)


Alignment Details
Target: chr6 (Bit Score: 117; Significance: 9e-60; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 46 - 194
Target Start/End: Original strand, 21558688 - 21558836
Alignment:
Q  46 ccctaaaatgacagacaatttgggacggaggaagtattatattactaagggatacatattacagacaacaatgtcgttaaaatccttgctagcagaaaac 145  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21558688 ccctaaaacgacatacaatttgggacggaggaagtattatattactaagggatacatattacagacaacaatgtcgttaaaatccttgctagcagaaaac 21558787  T
Q  146 ttagtgggataatacaaaaggaagnnnnnnnngagcgcatcgtgttact 194  Q
    ||||||||||||||||||||||||        |||||||||||||||||    
T  21558788 ttagtgggataatacaaaaggaagaaaaaaaagagcgcatcgtgttact 21558836  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 157
Target Start/End: Original strand, 21545417 - 21545497
Alignment:
Q  80 tattatattactaaggga-tacatattacagacaacaatgtcgttaaaatccttgctagc--agaaaacttagtgggataa 157  Q
    |||||||||| ||||||| ||||| |||||||||||||||||  ||||| |||| |||||   ||||||||| ||||||||    
T  21545417 tattatattattaagggaatacattttacagacaacaatgtcaataaaaaccttactagctaggaaaacttaatgggataa 21545497  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 8611846 - 8611809
Alignment:
Q  48 ctaaaatgacagacaatttgggacggaggaagtattat 85  Q
    ||||| ||||| ||||||||||||||||||||||||||    
T  8611846 ctaaagtgacatacaatttgggacggaggaagtattat 8611809  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 28537009 - 28537053
Alignment:
Q  48 ctaaaatgacagacaatttgggacggaggaagtattatattacta 92  Q
    ||||||||||| ||||||||||||||||| |||| ||||| ||||    
T  28537009 ctaaaatgacatacaatttgggacggagggagtactatataacta 28537053  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 15019811 - 15019778
Alignment:
Q  48 ctaaaatgacagacaatttgggacggaggaagta 81  Q
    ||||||||||| ||||||||||||||||||||||    
T  15019811 ctaaaatgacatacaatttgggacggaggaagta 15019778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 42490074 - 42490037
Alignment:
Q  48 ctaaaatgacagacaatttgggacggaggaagtattat 85  Q
    ||||| ||||| ||||||||||||||||||||||||||    
T  42490074 ctaaagtgacatacaatttgggacggaggaagtattat 42490037  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 29361492 - 29361533
Alignment:
Q  48 ctaaaatgacagacaatttgggacggaggaagtattatatta 89  Q
    ||||||||||| ||||||||||||||||| ||||| ||||||    
T  29361492 ctaaaatgacatacaatttgggacggagggagtataatatta 29361533  T

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