View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10145A_low_727 (Length: 211)
Name: NF10145A_low_727
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_727 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 125; Significance: 1e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 25106844 - 25107029
Alignment:
| Q |
13 |
acatcaaaataaaatccaaccgtggttgagtattcttcgcctctacatttgcaccatttgnnnnnnnncttcttattttaataagaattcttttggatat |
112 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
25106844 |
acatcaaaataaaatccaaccgtgattgagtattcttcgcctctacatttgcaccatttgttttt----ttcttattttaataagaattcttttggatat |
25106939 |
T |
|
| Q |
113 |
ttaacatctaacaccatctcctttttgtccaacccttcgtttcttacag----ttacaaaaaccaatgcttattttcaggggaacaccaa |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
25106940 |
ttaacatctaacaccatctcctttttgtccaactcttcgtttcttacggttctttacaaaaaccaatgcttattttccggggaacaccaa |
25107029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University