View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10145A_low_730 (Length: 210)
Name: NF10145A_low_730
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_730 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 133; Significance: 2e-69; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 24 - 199
Target Start/End: Original strand, 17032159 - 17032341
Alignment:
| Q |
24 |
gctagattattctatatagagtaaagatatcgtgttcaaagtacaaatatatgtgaaaatttgtgtggccatttataaagttagtttgctatca------ |
117 |
Q |
| |
|
|||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
17032159 |
gctatattgttctatatatagtaaagatatcgtgttcaaagtacaaatatatgtgaaaatttgtgtggccatttataaagttagtctactatcattgaac |
17032258 |
T |
|
| Q |
118 |
-atgaacatagtcaggatgtttggccataggaattgggaatatcattctacgaaatcaaatatattcttcttgtgatgtccat |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
17032259 |
aatgaacatagtcaggatgtttggccataggaattgggaatatcattctacgaaaccaaatatattcttcttgtgatgtccat |
17032341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 33 - 197
Target Start/End: Original strand, 17048571 - 17048742
Alignment:
| Q |
33 |
ttctatatagagtaaagatatcgtgttcaaagtacaaatatatgtgaaaatttgtgtggccatttataaagttagtttgctatca-------atgaacat |
125 |
Q |
| |
|
||||||||| |||| | |||| | |||||||||||||| ||| ||||||||||||||||||||||||||||||||| | |||||| |||||||| |
|
|
| T |
17048571 |
ttctatatatagtacaaatattgggttcaaagtacaaagatacgtgaaaatttgtgtggccatttataaagttagtctactatcattgaacaatgaacat |
17048670 |
T |
|
| Q |
126 |
agtcaggatgtttggccataggaattgggaatatcattctacgaaatcaaatatattcttcttgtgatgtcc |
197 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
17048671 |
agtcaggatgtttggcaataggaattgggaatatcattatatgaaatcaaatatattcttcttgtgatgtcc |
17048742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 33 - 193
Target Start/End: Original strand, 17042705 - 17042875
Alignment:
| Q |
33 |
ttctatatagagtaaagatatcgtgttcaaagtacaaatatatgtgaaaatttgtgtggccatttataaagttagtttgctatca-------atgaacat |
125 |
Q |
| |
|
||||||||| |||| | |||| | |||||||||||||| ||| ||||||||||||||||||||||||||||||||| | |||||| |||||||| |
|
|
| T |
17042705 |
ttctatatatagtacaaatattgggttcaaagtacaaagatacgtgaaaatttgtgtggccatttataaagttagtctactatcattgaaaaatgaacat |
17042804 |
T |
|
| Q |
126 |
agtcaggatgtttggccataggaattgggaatatcattctacgaaatca---aatatattcttcttgtgat |
193 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| || ||||||| ||||||||||||||||||| |
|
|
| T |
17042805 |
agtcaggatgtttggcaataggaattgggaatatcattatatgaaatcaaataatatattcttcttgtgat |
17042875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 77 - 199
Target Start/End: Original strand, 17036930 - 17037062
Alignment:
| Q |
77 |
tgaaaatttgtgtggccatttataaagttagtttgctatca-------atgaacatagtcaggatgtttggccataggaattgggaatatcattctacga |
169 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||| || || |
|
|
| T |
17036930 |
tgaaaatttttgtggccatttataaagttagtcagctatcattgaaaaatgaacatagtcaggatgtttggcaataggaattgggaatatcattatatga |
17037029 |
T |
|
| Q |
170 |
aatca---aatatattcttcttgtgatgtccat |
199 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |
|
|
| T |
17037030 |
aatcaaataatatattcttcttgtgatgtccat |
17037062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 57 - 197
Target Start/End: Original strand, 16994843 - 16994987
Alignment:
| Q |
57 |
gttcaaagtacaaatatatgtgaaaatttgtgtggccatttataaagttagtttgctatca-------atgaacatagtcaggatgtttggccataggaa |
149 |
Q |
| |
|
|||||||| ||||| ||| |||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||| | ||||| |
|
|
| T |
16994843 |
gttcaaagcacaaagatacttgaaaatttgtgtggccatttataaagttagtctactatcattgaacaatgaacatagtcaggatgtttggcaaaaggaa |
16994942 |
T |
|
| Q |
150 |
ttgggaatatcattctacgaaatcaaatatattcttcttgtgatgtcc |
197 |
Q |
| |
|
|||| | ||| ||| | |||||||||||||||||||||||||||||| |
|
|
| T |
16994943 |
ttggta-tattattat--gaaatcaaatatattcttcttgtgatgtcc |
16994987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 57 - 197
Target Start/End: Original strand, 17018078 - 17018222
Alignment:
| Q |
57 |
gttcaaagtacaaatatatgtgaaaatttgtgtggccatttataaagttagtttgctatca-------atgaacatagtcaggatgtttggccataggaa |
149 |
Q |
| |
|
|||||||| ||||| ||| |||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||| | ||||| |
|
|
| T |
17018078 |
gttcaaagcacaaagatacttgaaaatttgtgtggccatttataaagttagtctactatcattgaacaatgaacatagtcaggatgtttggcaaaaggaa |
17018177 |
T |
|
| Q |
150 |
ttgggaatatcattctacgaaatcaaatatattcttcttgtgatgtcc |
197 |
Q |
| |
|
|||| | ||| ||| | |||||||||||||||||||||||||||||| |
|
|
| T |
17018178 |
ttggta-tattattat--gaaatcaaatatattcttcttgtgatgtcc |
17018222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 16988137 - 16988218
Alignment:
| Q |
36 |
tatatagagtaaagatatcgtgttcaaagtacaaatatatgtgaaaatttgtgtggccatttataaagttagtttgctatca |
117 |
Q |
| |
|
|||||| |||| | |||| |||||||||||||||||||| ||| |||||||||||||||| ||||||||| |||||| |||| |
|
|
| T |
16988137 |
tatatatagtacatatattgtgttcaaagtacaaatatacgtgtaaatttgtgtggccatgtataaagtttgtttgcaatca |
16988218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 17017288 - 17017365
Alignment:
| Q |
35 |
ctatatagagtaaagatatcgtgttcaaagtacaaatatatgtgaaaatttgtgtggccatttataaagttagtttgc |
112 |
Q |
| |
|
||||||| |||| |||||| |||||||||||||||||||| |||||||||||||||| | | ||||||||| |||||| |
|
|
| T |
17017288 |
ctatatatagtacagatattgtgttcaaagtacaaatatacgtgaaaatttgtgtggtcttgtataaagtttgtttgc |
17017365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University