View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_733 (Length: 210)

Name: NF10145A_low_733
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_733
NF10145A_low_733
[»] chr8 (3 HSPs)
chr8 (21-190)||(32879940-32880109)
chr8 (20-190)||(32898811-32898981)
chr8 (20-190)||(32884772-32884937)


Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 21 - 190
Target Start/End: Original strand, 32879940 - 32880109
Alignment:
Q  21 aaccacgaaagggtggagactccacttgacaaagatctatacactatagatgatttagaagaatatgtataaagacattcatatgtctttttgatttaga 120  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  32879940 aaccacgaaagggtgtagactccacttgacaaagatctatacactatagatgatttagaagaatatgtataaagtcattcatatgtctttttgatttaga 32880039  T
Q  121 atctcctccttcttcaactagctaggtgtcatttgtggttcttaagggaacgagtcaccttaattatctt 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32880040 atctcctccttcttcaactagctaggtgtcatttgtggttcttaagggaacgagtcaccttaattatctt 32880109  T

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Target: chr8; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 32898811 - 32898981
Alignment:
Q  20 gaaccacgaaagggtggagactccacttgacaaagatctatacactatagatgatttagaagaatatgtataaagacattcatatgtctttttgatttag 119  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  32898811 gaaccacgaaaggatgtagactccacttgacaaagatctatacactatagatgatttagaagaatgtgtataaagtcattcatatgtctttttgatttag 32898910  T
Q  120 aatctcctccttcttcaactagctaggtgtcatttgtggttcttaagggaacgagtcaccttaattatctt 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32898911 aatctcctccttcttcaactagctaggtgtcatttgtggttcttaagggaacgagtcaccttaattatctt 32898981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 32884772 - 32884937
Alignment:
Q  20 gaaccacgaaagggtggagactccacttgacaaagatctatacactatagatgatttagaagaatatgtataaagacattcatatgtctttttgatttag 119  Q
    |||||||||| || || | |||||||||||||||||| |||  |    | ||||||||||||||||||||||||| ||||||||||||||||| || |||    
T  32884772 gaaccacgaatggatgtacactccacttgacaaagatatatgaa----acatgatttagaagaatatgtataaaggcattcatatgtcttttttatatag 32884867  T
Q  120 aatctcctccttcttcaactagctaggtgtcatttgtggttcttaagggaacgagtcaccttaattatctt 190  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32884868 aatctcctcct-cttcaactagctaggtgtcatttgtggttcttaagggaacgagtcaccttaattatctt 32884937  T

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