View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_735 (Length: 210)
Name: NF10145A_low_735
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_735 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 834961 - 834778
Alignment:
| Q |
18 |
aatatacaaataagtgcactaagaaggtgcaacaaacatggttacaaatatgaaataatgataaacaaaataatagtatatgctaaagttgacaaataaa |
117 |
Q |
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| T |
834961 |
aatatacaaaaaggtgcactaagaaggtgcaacaaacatggttacaaatatgaaataatgataaacaaaata---gtatatgctaaagttgacaaataaa |
834865 |
T |
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| Q |
118 |
tcaaagggaatgtgattgaattgaagaataaaaggagaaattaagaagc-----tttgtatatacctctaagtcttccttgatgtcc |
199 |
Q |
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| T |
834864 |
tcaaagggaatgtgattgaattgaagaataaaaggagaaattaagaagctttaatttgtatatacctctaagtcttccttgttgtcc |
834778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 39 - 199
Target Start/End: Complemental strand, 813244 - 813089
Alignment:
| Q |
39 |
agaaggtgcaacaaacatggttacaaatatgaaataatgataaacaaaataatagtatatgctaaagttgacaaataaatcaaagggaatgtgattgaat |
138 |
Q |
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||||||||||||||||||| |||||||||||| |||||| |||||||| | ||||||| | ||||| ||||||||| |||||| | ||||||||||| |
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| T |
813244 |
agaaggtgcaacaaacatgagtacaaatatgaactaatgaaaaacaaaaaa---gtatatgttgaagttaacaaataaaccaaaggaattgtgattgaat |
813148 |
T |
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| Q |
139 |
tgaagaataaaaggagaaattaagaagctttgtatatacctctaagtcttccttgatgtcc |
199 |
Q |
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| T |
813147 |
tgaagaataaa--gagaagataggaagttttgcatatacctctcagtcttccttgttgtcc |
813089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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