View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_741 (Length: 208)
Name: NF10145A_low_741
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_741 |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 3e-96; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 1411107 - 1410914
Alignment:
| Q |
1 |
tatgtttccaaagaagcttattccgttaggagattgaacacctgtgaatgttgcatatacagttccagtatccgaatttgaatcaccaaagttataaagt |
100 |
Q |
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| T |
1411107 |
tatgtttccaaagaagcttattccgttaggagattgaacacctgtaaatgttgcatatacagttccggtatccgaatttgaatcaccaaagttataaatt |
1411008 |
T |
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| Q |
101 |
gcagggtacacacatttgctagagttactattgccattcttctcacttgagacttggataaatgtacatgccacataaagattgaaacaccaaa |
194 |
Q |
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| T |
1411007 |
gcagggtacacacatttgctagagttactattgccattcttctcacttgagacttgaataaatgtacatgccacataaagattgaaacaccaaa |
1410914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 1414483 - 1414366
Alignment:
| Q |
1 |
tatgtttccaaagaagcttattccgttaggagattgaacacctgtgaatgttgcatatacagttccagtatccgaatttgaatcaccaaagttataaagt |
100 |
Q |
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| T |
1414483 |
tatgtttccaaagaagcttattccattaggaggttgaacacttgtatatgttgcatatatagttccagtatctgaatttgagtcaccaaagttataaatt |
1414384 |
T |
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| Q |
101 |
gcagggtacacacatttg |
118 |
Q |
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| T |
1414383 |
gcagggtacacacatttg |
1414366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 1419983 - 1419917
Alignment:
| Q |
50 |
gttgcatatacagttccagtatccgaatttgaatcaccaaagttataaagtgcagggtacacacatt |
116 |
Q |
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| T |
1419983 |
gttgcatatgcagttccagtatctgaatttgagtcaccaaagttataaattgcagggtacacacatt |
1419917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 1419912 - 1419863
Alignment:
| Q |
145 |
acttgagacttggataaatgtacatgccacataaagattgaaacaccaaa |
194 |
Q |
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| T |
1419912 |
acttgaaacttgaataaatgtacatgtcacatacaggttgaaacaccaaa |
1419863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 6 - 117
Target Start/End: Complemental strand, 3600618 - 3600507
Alignment:
| Q |
6 |
ttccaaagaagcttattccgttaggagattgaacacctgtgaatgttgcatatacagttccagtatccgaatttgaatcaccaaagttataaagtgcagg |
105 |
Q |
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| T |
3600618 |
ttccaaagaagcttataccattaggatgctcaacagctgccattgttgcatatccagctccagtatctgaattggagtcaccaaagttgtatattgctgg |
3600519 |
T |
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| Q |
106 |
gtacacacattt |
117 |
Q |
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| T |
3600518 |
gtagacacattt |
3600507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 6 - 117
Target Start/End: Complemental strand, 14339485 - 14339374
Alignment:
| Q |
6 |
ttccaaagaagcttattccgttaggagattgaacacctgtgaatgttgcatatacagttccagtatccgaatttgaatcaccaaagttataaagtgcagg |
105 |
Q |
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|||||||||||||||| || |||||| | | |||| ||| |||||||||| ||| ||||||||| ||||| || ||||||||||| || | ||| || |
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| T |
14339485 |
ttccaaagaagcttataccattaggatactcaacagctgccgttgttgcatatccagctccagtatctgaattggagtcaccaaagttgtatattgctgg |
14339386 |
T |
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| Q |
106 |
gtacacacattt |
117 |
Q |
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||| |||||||| |
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| T |
14339385 |
gtagacacattt |
14339374 |
T |
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