View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_746 (Length: 207)
Name: NF10145A_low_746
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_746 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 7 - 206
Target Start/End: Complemental strand, 33104705 - 33104506
Alignment:
| Q |
7 |
tggacatcaaggttaattatatacctgaacaatagctacacgtaaaaggttaccacgcagtccaacagcaatggaagctgcagccatgaccgcaggacct |
106 |
Q |
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| T |
33104705 |
tggaaatcaaggttaattatatacctgaacaatagctacacgtaaaaggttaccacgcagtccaacagcaatggaagctgcagccatgactgcaggacct |
33104606 |
T |
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| Q |
107 |
gtaagaaatcgaacagccattgcaaatgaagcaactgagtttccacatgcaatcatcttgggttgtagagccataaacaaacctgtgcatatgcaaacaa |
206 |
Q |
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| T |
33104605 |
gtaagaaatcgaacagccattgcaaatgaagcaactgagtttccacatgcaatcatcttgggttgtagagccataaacaaacctgtgcatatgcaaacaa |
33104506 |
T |
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Target: chr1 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 29 - 190
Target Start/End: Original strand, 10835806 - 10835967
Alignment:
| Q |
29 |
acctgaacaatagctacacgtaaaaggttaccacgcagtccaacagcaatggaagctgcagccatgaccgcaggacctgtaagaaatcgaacagccattg |
128 |
Q |
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| T |
10835806 |
acctgaacaatagctacatgtaggagggtcccacggaggccaacggcgatagaagctgctgccataactgctggaccagtaaggaatcttatagccatgg |
10835905 |
T |
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| Q |
129 |
caaatgaagcaactgagtttccacatgcaatcatcttgggttgtagagccataaacaaacct |
190 |
Q |
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| T |
10835906 |
caaatgaagcaacagaattcccacatgcaatgatcttgggttgaagagccataaacagacct |
10835967 |
T |
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