View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_750 (Length: 206)

Name: NF10145A_low_750
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_750
NF10145A_low_750
[»] scaffold0005 (1 HSPs)
scaffold0005 (16-189)||(32603-32776)
[»] chr4 (3 HSPs)
chr4 (16-189)||(14806951-14807124)
chr4 (25-190)||(54955148-54955313)
chr4 (25-182)||(22328501-22328658)
[»] chr3 (3 HSPs)
chr3 (16-189)||(16606559-16606732)
chr3 (16-189)||(22058681-22058854)
chr3 (25-190)||(23009178-23009343)
[»] scaffold0002 (1 HSPs)
scaffold0002 (17-189)||(359932-360104)
[»] chr6 (2 HSPs)
chr6 (16-189)||(14897809-14897982)
chr6 (25-190)||(7408641-7408806)
[»] chr2 (2 HSPs)
chr2 (20-189)||(21595525-21595694)
chr2 (25-190)||(40066680-40066845)
[»] chr7 (5 HSPs)
chr7 (59-186)||(12925999-12926126)
chr7 (25-190)||(4807809-4807974)
chr7 (25-190)||(12766426-12766591)
chr7 (25-189)||(13822253-13822417)
chr7 (25-190)||(17728545-17728710)
[»] chr5 (2 HSPs)
chr5 (25-190)||(23607666-23607831)
chr5 (25-190)||(23839062-23839227)
[»] chr1 (2 HSPs)
chr1 (25-190)||(26082444-26082609)
chr1 (25-190)||(24638316-24638481)
[»] chr8 (5 HSPs)
chr8 (25-190)||(18762372-18762537)
chr8 (25-190)||(28500675-28500840)
chr8 (25-190)||(27893083-27893248)
chr8 (25-190)||(27905322-27905487)
chr8 (25-190)||(27951741-27951906)


Alignment Details
Target: scaffold0005 (Bit Score: 138; Significance: 2e-72; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 32603 - 32776
Alignment:
Q  16 catcattgagtaaaactttaacgccttctcgttcgggattatttcctcttcaatgccctcattgtaagacaaattcaccctgagagcgtcaccgaccaca 115  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |    
T  32603 catcattgagtaaaacttcaacgccttctcattcgggattatttcctcttcaatgccctcattgtaagacaaattcaccccgagagtgtcaccgaccata 32702  T
Q  116 tctttcatgaggccacagttttcacactgtatatgtgctccactgcttgaagcctgcatattaacatcaaactc 189  Q
    |||| |||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  32703 tcttccatgaggccaaagttttcacactgtgtatgcgctccactgcttgaagcctgcatattaacatcaaactc 32776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 138; Significance: 2e-72; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 14807124 - 14806951
Alignment:
Q  16 catcattgagtaaaactttaacgccttctcgttcgggattatttcctcttcaatgccctcattgtaagacaaattcaccctgagagcgtcaccgaccaca 115  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |    
T  14807124 catcattgagtaaaacttcaacgccttctcattcgggattatttcctcttcaatgccctcattgtaagacaaattcaccccgagagtgtcaccgaccata 14807025  T
Q  116 tctttcatgaggccacagttttcacactgtatatgtgctccactgcttgaagcctgcatattaacatcaaactc 189  Q
    |||| |||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  14807024 tcttccatgaggccaaagttttcacactgtgtatgcgctccactgcttgaagcctgcatattaacatcaaactc 14806951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 25 - 190
Target Start/End: Original strand, 54955148 - 54955313
Alignment:
Q  25 gtaaaactttaacgccttctcgttcgggattatttcctcttcaatgccctcattgtaagacaaattcaccctgagagcgtcaccgaccacatctttcatg 124  Q
    ||||||||| ||||| ||||| ||||||||| |||||||||||   ||||| |||||||||| ||||||||  || || |||||||||| ||||| |||     
T  54955148 gtaaaacttcaacgctttctcattcgggattgtttcctcttcaccaccctcgttgtaagacagattcaccccaagtgcatcaccgaccatatcttccatc 54955247  T
Q  125 aggccacagttttcacactgtatatgtgctccactgcttgaagcctgcatattaacatcaaactcg 190  Q
    | |||| ||||||||||||  ||| | ||  ||||||||||||| ||||||||||||||| |||||    
T  54955248 acgccaaagttttcacactccatacgcgcctcactgcttgaagcgtgcatattaacatcagactcg 54955313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 182
Target Start/End: Complemental strand, 22328658 - 22328501
Alignment:
Q  25 gtaaaactttaacgccttctcgttcgggattatttcctcttcaatgccctcattgtaagacaaattcaccctgagagcgtcaccgaccacatctttcatg 124  Q
    ||||||||| ||||| ||||| ||||||||| |||||||||||   |||||  |||||||||  |||||||  ||||| |||||||||| ||||| |||     
T  22328658 gtaaaacttcaacgctttctcattcgggattgtttcctcttcaccaccctcggtgtaagacaggttcaccccaagagcatcaccgaccatatcttccatc 22328559  T
Q  125 aggccacagttttcacactgtatatgtgctccactgcttgaagcctgcatattaacat 182  Q
    |  ||| |||||| |||||  ||| | ||  ||||||||||||| |||||||||||||    
T  22328558 acaccaaagttttaacactccatacgcgcctcactgcttgaagcgtgcatattaacat 22328501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 138; Significance: 2e-72; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 16606559 - 16606732
Alignment:
Q  16 catcattgagtaaaactttaacgccttctcgttcgggattatttcctcttcaatgccctcattgtaagacaaattcaccctgagagcgtcaccgaccaca 115  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |    
T  16606559 catcattgagtaaaacttcaacgccttctcattcgggattatttcctcttcaatgccctcattgtaagacaaattcaccccgagagcgtcaccaaccata 16606658  T
Q  116 tctttcatgaggccacagttttcacactgtatatgtgctccactgcttgaagcctgcatattaacatcaaactc 189  Q
    |||| |||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  16606659 tcttccatgaggccaaagttttcacactgtgtatgtgctccactacttgaagcctgcatattaacatcaaactc 16606732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 22058854 - 22058681
Alignment:
Q  16 catcattgagtaaaactttaacgccttctcgttcgggattatttcctcttcaatgccctcattgtaagacaaattcaccctgagagcgtcaccgaccaca 115  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |    
T  22058854 catcattgagtaaaacttcaacgccttctcattcgggattatttcctcttcaatgccctcattgtaagacaaattcaccccgagagcgtcaccaaccata 22058755  T
Q  116 tctttcatgaggccacagttttcacactgtatatgtgctccactgcttgaagcctgcatattaacatcaaactc 189  Q
    |||| |||||||||| |||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||    
T  22058754 tcttccatgaggccaaagttttcacactgtgtatgcgctccactacttgaagcctgcatattaacatcaaactc 22058681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 25 - 190
Target Start/End: Complemental strand, 23009343 - 23009178
Alignment:
Q  25 gtaaaactttaacgccttctcgttcgggattatttcctcttcaatgccctcattgtaagacaaattcaccctgagagcgtcaccgaccacatctttcatg 124  Q
    ||||||||| ||||| ||||| ||||||||| |||||||||||   ||||| ||||||||||  |||||||  | ||| |||||||||| ||||| |||     
T  23009343 gtaaaacttcaacgctttctcattcgggattgtttcctcttcaccaccctcgttgtaagacaggttcaccccaacagcatcaccgaccatatcttccatc 23009244  T
Q  125 aggccacagttttcacactgtatatgtgctccactgcttgaagcctgcatattaacatcaaactcg 190  Q
    | |||| ||||||||||||  ||| ||||  ||||||||||||| |||||||||||||||||||||    
T  23009243 acgccaaagttttcacactccatacgtgcctcactgcttgaagcgtgcatattaacatcaaactcg 23009178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 359932 - 360104
Alignment:
Q  17 atcattgagtaaaactttaacgccttctcgttcgggattatttcctcttcaatgccctcattgtaagacaaattcaccctgagagcgtcaccgaccacat 116  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  359932 atcattgagtaaaacttcaacgccttctcattcgggattatttcctcctcaatgccctcattgtaagacaaattcaccccgagagcgtcaccgaccatat 360031  T
Q  117 ctttcatgaggccacagttttcacactgtatatgtgctccactgcttgaagcctgcatattaacatcaaactc 189  Q
    ||| |||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  360032 cttccatgaggccaaagttttcacactgtgtatgcgctccactgcttgaagcctgcatattaacatcaaactc 360104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 134; Significance: 6e-70; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 14897982 - 14897809
Alignment:
Q  16 catcattgagtaaaactttaacgccttctcgttcgggattatttcctcttcaatgccctcattgtaagacaaattcaccctgagagcgtcaccgaccaca 115  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |    
T  14897982 catcattgagtaaaacttcaacgccttctcattcgggattatttcctcttcaatgccctcattgtaagacaaattcaccccgagagcgtcaccaaccata 14897883  T
Q  116 tctttcatgaggccacagttttcacactgtatatgtgctccactgcttgaagcctgcatattaacatcaaactc 189  Q
    |||| |||||||||| |||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||    
T  14897882 tcttccatgaggccaaagttttcacactgtgtatgcgctccactacttgaagcctgcatattaacatcaaactc 14897809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 25 - 190
Target Start/End: Original strand, 7408641 - 7408806
Alignment:
Q  25 gtaaaactttaacgccttctcgttcgggattatttcctcttcaatgccctcattgtaagacaaattcaccctgagagcgtcaccgaccacatctttcatg 124  Q
    ||||||||| ||||| ||||| ||||||||| |||||||||||   ||||| ||||||||||  |||||||  || || |||||||||| ||||| |||     
T  7408641 gtaaaacttcaacgctttctcattcgggattgtttcctcttcaccaccctcgttgtaagacaggttcaccccaagtgcatcaccgaccatatcttccatc 7408740  T
Q  125 aggccacagttttcacactgtatatgtgctccactgcttgaagcctgcatattaacatcaaactcg 190  Q
    | |||| ||||||||||||  ||| | ||  | ||||||||||| ||||||||||||||| |||||    
T  7408741 acgccaaagttttcacactccatacgcgcctcgctgcttgaagcgtgcatattaacatcagactcg 7408806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 134; Significance: 6e-70; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 21595694 - 21595525
Alignment:
Q  20 attgagtaaaactttaacgccttctcgttcgggattatttcctcttcaatgccctcattgtaagacaaattcaccctgagagcgtcaccgaccacatctt 119  Q
    |||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  21595694 attgagtaaaacttcaacgtcttctcattcgggattatttcctcttcaatgccctcattgtaagacaaattcaccccgagagcgtcaccgaccatatctt 21595595  T
Q  120 tcatgaggccacagttttcacactgtatatgtgctccactgcttgaagcctgcatattaacatcaaactc 189  Q
     |||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  21595594 ccatgaggccaaagttttcacactatgtatgtgctccactgcttgaagcctgcatattaacatcaaactc 21595525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 25 - 190
Target Start/End: Complemental strand, 40066845 - 40066680
Alignment:
Q  25 gtaaaactttaacgccttctcgttcgggattatttcctcttcaatgccctcattgtaagacaaattcaccctgagagcgtcaccgaccacatctttcatg 124  Q
    ||||||||| ||||| ||||| ||||||||| |||||||||||   ||||| ||||||||||  |||||||  || || |||||||||| ||||| |||     
T  40066845 gtaaaacttcaacgctttctcattcgggattgtttcctcttcaccaccctcgttgtaagacaggttcaccccaagtgcatcaccgaccatatcttccatc 40066746  T
Q  125 aggccacagttttcacactgtatatgtgctccactgcttgaagcctgcatattaacatcaaactcg 190  Q
    | |||| ||||||||||||  ||| | ||  ||||||||||||| ||||||||||||||| |||||    
T  40066745 acgccaaagttttcacactccatacgcgcctcactgcttgaagcgtgcatattaacatcagactcg 40066680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 4e-40; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 59 - 186
Target Start/End: Complemental strand, 12926126 - 12925999
Alignment:
Q  59 tcctcttcaatgccctcattgtaagacaaattcaccctgagagcgtcaccgaccacatctttcatgaggccacagttttcacactgtatatgtgctccac 158  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||| ||| |||||| ||||||||||| || |||| |||||||    
T  12926126 tcctcttcaatgccctcattgtaagacaagttcaccccgagagcgtcaccgaccatatcttccataaggccaaagttttcacaccgtgtatgcgctccac 12926027  T
Q  159 tgcttgaagcctgcatattaacatcaaa 186  Q
    || |||||||||||| ||||||||||||    
T  12926026 tgtttgaagcctgcacattaacatcaaa 12925999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 25 - 190
Target Start/End: Original strand, 4807809 - 4807974
Alignment:
Q  25 gtaaaactttaacgccttctcgttcgggattatttcctcttcaatgccctcattgtaagacaaattcaccctgagagcgtcaccgaccacatctttcatg 124  Q
    ||||||||| ||||| ||||| ||||||||| |||||||||||   ||||| ||||||||||  |||||||  || || |||||||||| ||||| |||     
T  4807809 gtaaaacttcaacgctttctcattcgggattgtttcctcttcaccaccctcgttgtaagacaggttcaccccaagtgcatcaccgaccatatcttccatc 4807908  T
Q  125 aggccacagttttcacactgtatatgtgctccactgcttgaagcctgcatattaacatcaaactcg 190  Q
    | |||| ||||||||||||  ||| | ||  | ||||||||||| ||||||||||||||| |||||    
T  4807909 acgccaaagttttcacactccatacgcgcctcgctgcttgaagcgtgcatattaacatcagactcg 4807974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 25 - 190
Target Start/End: Original strand, 12766426 - 12766591
Alignment:
Q  25 gtaaaactttaacgccttctcgttcgggattatttcctcttcaatgccctcattgtaagacaaattcaccctgagagcgtcaccgaccacatctttcatg 124  Q
    ||||||||| ||||| ||||| ||||||||| |||||||||||   ||||| ||||||||||  |||||||  || || |||||||||| ||||| |||     
T  12766426 gtaaaacttcaacgctttctcattcgggattgtttcctcttcaccaccctcgttgtaagacaggttcaccccaagtgcatcaccgaccatatcttccatc 12766525  T
Q  125 aggccacagttttcacactgtatatgtgctccactgcttgaagcctgcatattaacatcaaactcg 190  Q
    | |||| ||||||||||||  ||| | ||  | ||||||||||| ||||||||||||||| |||||    
T  12766526 acgccaaagttttcacactccatacgcgcctcgctgcttgaagcgtgcatattaacatcagactcg 12766591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 25 - 189
Target Start/End: Complemental strand, 13822417 - 13822253
Alignment:
Q  25 gtaaaactttaacgccttctcgttcgggattatttcctcttcaatgccctcattgtaagacaaattcaccctgagagcgtcaccgaccacatctttcatg 124  Q
    ||||||| | ||||| || || ||||||||| |||||||||||   ||||| ||||||||||  |||||||  ||||| |||||||||| ||||| |||     
T  13822417 gtaaaacgtcaacgctttttcattcgggattgtttcctcttcaccaccctcgttgtaagacaggttcaccccaagagcatcaccgaccatatcttccatc 13822318  T
Q  125 aggccacagttttcacactgtatatgtgctccactgcttgaagcctgcatattaacatcaaactc 189  Q
    | |||| ||||||||||||  ||| | ||  ||||||||||||| ||||||||||||||| ||||    
T  13822317 acgccaaagttttcacactccatacgcgcctcactgcttgaagcgtgcatattaacatcagactc 13822253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 190
Target Start/End: Complemental strand, 17728710 - 17728545
Alignment:
Q  25 gtaaaactttaacgccttctcgttcgggattatttcctcttcaatgccctcattgtaagacaaattcaccctgagagcgtcaccgaccacatctttcatg 124  Q
    ||||||||| ||||| ||||| ||| ||||| ||||||||||    ||||| ||||||||||| ||||||   ||||| |||||||| | ||||| |||     
T  17728710 gtaaaacttcaacgctttctcattcaggattgtttcctcttcgccaccctcgttgtaagacaagttcaccgcaagagcatcaccgactatatcttccatc 17728611  T
Q  125 aggccacagttttcacactgtatatgtgctccactgcttgaagcctgcatattaacatcaaactcg 190  Q
    |  ||| || |||||||||  ||| | ||  ||||||||||||| ||||||||||||||| |||||    
T  17728610 acaccaaagatttcacactccatacgcgcctcactgcttgaagcgtgcatattaacatcagactcg 17728545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 25 - 190
Target Start/End: Complemental strand, 23607831 - 23607666
Alignment:
Q  25 gtaaaactttaacgccttctcgttcgggattatttcctcttcaatgccctcattgtaagacaaattcaccctgagagcgtcaccgaccacatctttcatg 124  Q
    ||||||||| ||||| ||||| ||||||||| |||||||||||   ||||| ||||||||||  |||||||  ||||| |||||||||| ||||| |||     
T  23607831 gtaaaacttcaacgctttctcattcgggattgtttcctcttcaccaccctcgttgtaagacaggttcaccccaagagcatcaccgaccatatcttccatc 23607732  T
Q  125 aggccacagttttcacactgtatatgtgctccactgcttgaagcctgcatattaacatcaaactcg 190  Q
    | |||| ||||||||||||  ||| | ||  ||||||||||||| ||||||||||||||| |||||    
T  23607731 acgccaaagttttcacactccatacgcgcctcactgcttgaagcgtgcatattaacatcagactcg 23607666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 25 - 190
Target Start/End: Complemental strand, 23839227 - 23839062
Alignment:
Q  25 gtaaaactttaacgccttctcgttcgggattatttcctcttcaatgccctcattgtaagacaaattcaccctgagagcgtcaccgaccacatctttcatg 124  Q
    ||||||||| ||||| ||||| ||||||||| |||||||||||   ||||| ||||||||||  |||||||  ||||| |||||||||| ||||| |||     
T  23839227 gtaaaacttcaacgctttctcattcgggattgtttcctcttcaccaccctcgttgtaagacaggttcaccccaagagcatcaccgaccatatcttccatc 23839128  T
Q  125 aggccacagttttcacactgtatatgtgctccactgcttgaagcctgcatattaacatcaaactcg 190  Q
    | |||| ||||||||||||  ||| | ||  ||||||||||||| ||||||||||||||| |||||    
T  23839127 acgccaaagttttcacactccatacgcgcctcactgcttgaagcgtgcatattaacatcagactcg 23839062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 25 - 190
Target Start/End: Original strand, 26082444 - 26082609
Alignment:
Q  25 gtaaaactttaacgccttctcgttcgggattatttcctcttcaatgccctcattgtaagacaaattcaccctgagagcgtcaccgaccacatctttcatg 124  Q
    ||||||||| ||||| ||||| ||||||||| |||||||||||   ||||| ||||||||||  |||||||  || || |||||||||| ||||| |||     
T  26082444 gtaaaacttcaacgctttctcattcgggattgtttcctcttcaccaccctcgttgtaagacaggttcaccccaagtgcatcaccgaccatatcttccatc 26082543  T
Q  125 aggccacagttttcacactgtatatgtgctccactgcttgaagcctgcatattaacatcaaactcg 190  Q
    | |||| ||||||||||||  ||| | ||  | ||||||||||| ||||||||||||||| |||||    
T  26082544 acgccaaagttttcacactccatacgcgcctcgctgcttgaagcgtgcatattaacatcagactcg 26082609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 190
Target Start/End: Complemental strand, 24638481 - 24638316
Alignment:
Q  25 gtaaaactttaacgccttctcgttcgggattatttcctcttcaatgccctcattgtaagacaaattcaccctgagagcgtcaccgaccacatctttcatg 124  Q
    ||||||||| ||||| ||||| ||||||||| |||||||||||   ||||| || ||||||| ||||||||  ||||| ||| |||||| ||||| |||     
T  24638481 gtaaaacttcaacgctttctcattcgggattgtttcctcttcaccaccctcgttataagacagattcaccccaagagcatcatcgaccatatcttccatc 24638382  T
Q  125 aggccacagttttcacactgtatatgtgctccactgcttgaagcctgcatattaacatcaaactcg 190  Q
    | |||| ||||||||||||  ||| |  |  |||| |||||||| ||||||| ||||||| |||||    
T  24638381 acgccaaagttttcacactccatacgcacctcactacttgaagcgtgcatatcaacatcagactcg 24638316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 8e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 25 - 190
Target Start/End: Complemental strand, 18762537 - 18762372
Alignment:
Q  25 gtaaaactttaacgccttctcgttcgggattatttcctcttcaatgccctcattgtaagacaaattcaccctgagagcgtcaccgaccacatctttcatg 124  Q
    ||||||||| ||| | ||||| ||| ||||| |||||||||||   ||||| ||||||||||  |||||||  ||||| |||||||||| ||||| |||     
T  18762537 gtaaaacttcaacactttctcattcaggattgtttcctcttcaccaccctcgttgtaagacaggttcaccccaagagcatcaccgaccatatcttccatc 18762438  T
Q  125 aggccacagttttcacactgtatatgtgctccactgcttgaagcctgcatattaacatcaaactcg 190  Q
    | |||| | ||||||||||  ||| | ||  ||||||||||||| ||||||||||||||| |||||    
T  18762437 acgccaaaattttcacactccatacgcgcctcactgcttgaagcgtgcatattaacatcagactcg 18762372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 25 - 190
Target Start/End: Original strand, 28500675 - 28500840
Alignment:
Q  25 gtaaaactttaacgccttctcgttcgggattatttcctcttcaatgccctcattgtaagacaaattcaccctgagagcgtcaccgaccacatctttcatg 124  Q
    ||||||||| ||||| ||||| ||||||||| |||||||||||   |||||  |||||||||  |||||||  ||||| |||||||||| ||||| |||     
T  28500675 gtaaaacttcaacgctttctcattcgggattgtttcctcttcaccaccctcggtgtaagacaggttcacccaaagagcatcaccgaccatatcttccatc 28500774  T
Q  125 aggccacagttttcacactgtatatgtgctccactgcttgaagcctgcatattaacatcaaactcg 190  Q
    |  ||| ||||||||||||  ||| | ||  |||||||||| || ||||||||||||||| |||||    
T  28500775 acaccaaagttttcacactccatacgcgcctcactgcttgaggcgtgcatattaacatcagactcg 28500840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 190
Target Start/End: Original strand, 27893083 - 27893248
Alignment:
Q  25 gtaaaactttaacgccttctcgttcgggattatttcctcttcaatgccctcattgtaagacaaattcaccctgagagcgtcaccgaccacatctttcatg 124  Q
    ||||||||| || || ||||| ||||||||| |||||||||||   ||||| |||||||| |  |||||||  || |  |||||||  | ||||| |||     
T  27893083 gtaaaacttcaatgctttctcattcgggattgtttcctcttcaccaccctcgttgtaagagaggttcaccccaagtgaatcaccgataatatcttccatc 27893182  T
Q  125 aggccacagttttcacactgtatatgtgctccactgcttgaagcctgcatattaacatcaaactcg 190  Q
    | |||| ||||||||||||  ||| | ||  ||||||||||||| ||||||||||||||| |||||    
T  27893183 acgccaaagttttcacactccatacgcgcctcactgcttgaagcgtgcatattaacatcatactcg 27893248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 190
Target Start/End: Original strand, 27905322 - 27905487
Alignment:
Q  25 gtaaaactttaacgccttctcgttcgggattatttcctcttcaatgccctcattgtaagacaaattcaccctgagagcgtcaccgaccacatctttcatg 124  Q
    ||||||||| || || ||||| ||||||||| |||||||||||   ||||| |||||||| |  |||||||  || |  |||||||  | ||||| |||     
T  27905322 gtaaaacttcaatgctttctcattcgggattgtttcctcttcaccaccctcgttgtaagagaggttcaccccaagtgaatcaccgataatatcttccatc 27905421  T
Q  125 aggccacagttttcacactgtatatgtgctccactgcttgaagcctgcatattaacatcaaactcg 190  Q
    | |||| ||||||||||||  ||| | ||  ||||||||||||| ||||||||||||||| |||||    
T  27905422 acgccaaagttttcacactccatacgcgcctcactgcttgaagcgtgcatattaacatcatactcg 27905487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 190
Target Start/End: Original strand, 27951741 - 27951906
Alignment:
Q  25 gtaaaactttaacgccttctcgttcgggattatttcctcttcaatgccctcattgtaagacaaattcaccctgagagcgtcaccgaccacatctttcatg 124  Q
    ||||||||| || || ||||| ||||||||| |||||||||||   ||||| |||||||| |  |||||||  || |  |||||||  | ||||| |||     
T  27951741 gtaaaacttcaatgctttctcattcgggattgtttcctcttcaccaccctcgttgtaagagaggttcaccccaagtgaatcaccgataatatcttccatc 27951840  T
Q  125 aggccacagttttcacactgtatatgtgctccactgcttgaagcctgcatattaacatcaaactcg 190  Q
    | |||| ||||||||||||  ||| | ||  ||||||||||||| ||||||||||||||| |||||    
T  27951841 acgccaaagttttcacactccatacgcgcctcactgcttgaagcgtgcatattaacatcatactcg 27951906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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