View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_757 (Length: 205)

Name: NF10145A_low_757
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_757
NF10145A_low_757
[»] scaffold0019 (1 HSPs)
scaffold0019 (21-195)||(182869-183043)
[»] chr1 (3 HSPs)
chr1 (31-195)||(23632168-23632330)
chr1 (43-122)||(12786236-12786315)
chr1 (25-131)||(18513817-18513922)
[»] scaffold0088 (1 HSPs)
scaffold0088 (21-131)||(35483-35592)
[»] scaffold0281 (1 HSPs)
scaffold0281 (25-128)||(1839-1940)
[»] chr4 (2 HSPs)
chr4 (25-108)||(23974136-23974218)
chr4 (43-91)||(11153843-11153891)
[»] chr2 (3 HSPs)
chr2 (25-122)||(16093525-16093620)
chr2 (21-92)||(27386931-27387002)
chr2 (40-71)||(32623614-32623645)
[»] chr6 (3 HSPs)
chr6 (40-122)||(19769042-19769124)
chr6 (40-93)||(19892897-19892950)
chr6 (21-143)||(9548733-9548853)
[»] chr8 (3 HSPs)
chr8 (21-68)||(42147468-42147515)
chr8 (29-175)||(17290570-17290716)
chr8 (25-93)||(40391402-40391470)
[»] chr7 (2 HSPs)
chr7 (40-122)||(18147616-18147698)
chr7 (40-98)||(11508723-11508781)
[»] chr5 (2 HSPs)
chr5 (44-122)||(39176441-39176519)
chr5 (43-93)||(39435973-39436023)
[»] chr3 (5 HSPs)
chr3 (42-131)||(30993251-30993339)
chr3 (25-93)||(15777339-15777406)
chr3 (24-90)||(18705520-18705586)
chr3 (44-93)||(3593101-3593149)
chr3 (41-144)||(18534434-18534535)
[»] scaffold0323 (1 HSPs)
scaffold0323 (64-144)||(16223-16303)


Alignment Details
Target: scaffold0019 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 21 - 195
Target Start/End: Complemental strand, 183043 - 182869
Alignment:
Q  21 aggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaaggagggaagtttctatttagcatatgggt 120  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  183043 aggcatagggagaggaacgtagatagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaaggggggaaatttctatttagcatatgggt 182944  T
Q  121 tgcatgaacatgtggtagtgaaggatctttgcttgctttcatgatcttttgatgaatttatgttgtgatgtccat 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  182943 tgcatgaacatgtggtagtgaaggatctttgcttgctttcatgatcttttgatgaatttatcttgtgatgtccat 182869  T

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Target: chr1 (Bit Score: 109; Significance: 5e-55; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 31 - 195
Target Start/End: Original strand, 23632168 - 23632330
Alignment:
Q  31 agaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaaggagggaagtttctatttagcatatgggttgcatgaaca 130  Q
    |||| ||||||||||||||||||||||||| || |||||||||||   ||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  23632168 agagaaacgtagagagagatttcaccgtaggaactcatcaaattcgaaaaactagaggtaagggggga-gtttctatttagcatatgggttgcatgaaca 23632266  T
Q  131 tgtggtagtgaaggatctttgcttgctttcatgatcttttgatgaatttatgttgtgatgtccat 195  Q
     ||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  23632267 cgtgggtgtgaaggatctttgcttgctttcatgatcttttgatgaatttat-ttgtgatgtccat 23632330  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 12786315 - 12786236
Alignment:
Q  43 agagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaaggagggaagtttctatttagcatatgggttg 122  Q
    |||||||||||||||||| || |||||||||||| |||||||||||||| | ||| ||| |||||| | |||| ||||||    
T  12786315 agagagatttcaccgtaggaattcatcaaattctccaaactagaggtaatggggggagtctctattcatcataagggttg 12786236  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 131
Target Start/End: Original strand, 18513817 - 18513922
Alignment:
Q  25 atagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaaggagggaagtttctatttagcatatgggttgca 124  Q
    |||| |||| |||| ||||||||||||| | | ||| |||||||||| |||   |||||| |||||||| ||||||| |||||| | |||| |||||| |    
T  18513817 atagtgagaagaacctagagagagattttaacataggaaatcatcaatttcgcaaaactaaaggtaagg-gggaagtctctattcaccataagggttgta 18513915  T
Q  125 tgaacat 131  Q
    |||||||    
T  18513916 tgaacat 18513922  T

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Target: scaffold0088 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 21 - 131
Target Start/End: Original strand, 35483 - 35592
Alignment:
Q  21 aggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaaggagggaagtttctatttagcatatgggt 120  Q
    ||||||||| |||||||||||||||||||||||||||||| || |||||||||||  |||||||||||||||| ||| ||| |||||| ||| || ||||    
T  35483 aggcatagcaagaggaacgtagagagagatttcaccgtaggaactcatcaaattcgacaaactagaggtaagg-ggggagtctctattcagcgtaagggt 35581  T
Q  121 tgcatgaacat 131  Q
    || || |||||    
T  35582 tgtatcaacat 35592  T

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Target: scaffold0281 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 128
Target Start/End: Complemental strand, 1940 - 1839
Alignment:
Q  25 atagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaaggagggaagtttctatttagcatatgggttgca 124  Q
    ||||||||| |||| || |||||||||||||||||| |||||||| |||||||||||||||||||| || ||| ||| |||||||| |||| |||||| |    
T  1940 atagcgagaagaacctacagagagatttcaccgtaggaaatcatc-aattctgcaaactagaggtatgg-ggggagtctctatttaccataagggttgta 1843  T
Q  125 tgaa 128  Q
    ||||    
T  1842 tgaa 1839  T

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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 108
Target Start/End: Complemental strand, 23974218 - 23974136
Alignment:
Q  25 atagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaaggagggaagtttctatt 108  Q
    ||||||||| |||| |||||| |||||||||||||| |||||||| ||||||||||||||||||||| | ||| ||||| ||||    
T  23974218 atagcgagaagaacctagagaaagatttcaccgtaggaaatcatc-aattctgcaaactagaggtaatggggggagtttttatt 23974136  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 11153891 - 11153843
Alignment:
Q  43 agagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaa 91  Q
    |||||||||||||||||  || |||||||||||| | ||||||||||||    
T  11153891 agagagatttcaccgtatgaattcatcaaattcttcgaactagaggtaa 11153843  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 122
Target Start/End: Complemental strand, 16093620 - 16093525
Alignment:
Q  25 atagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaaggagggaagtttctatttagcatatgggttg 122  Q
    |||||||||||||| |||||||||||||||| ||||||| ||||| | || |||||||||||||||| ||||| ||| |||||| | |||| ||||||    
T  16093620 atagcgagaggaacctagagagagatttcactgtagaaattcatc-acttttgcaaactagaggtaa-gaggggagtctctattcaccataagggttg 16093525  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 27386931 - 27387002
Alignment:
Q  21 aggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaag 92  Q
    |||||| |||||| |||| ||||||||||||||||||||||||||||| || |||   ||||||||||||||    
T  27386931 aggcatggcgagaagaacctagagagagatttcaccgtagaaaatcattaatttcgcaaaactagaggtaag 27387002  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 71
Target Start/End: Original strand, 32623614 - 32623645
Alignment:
Q  40 tagagagagatttcaccgtagaaaatcatcaa 71  Q
    ||||||||||||||||||||||||||||||||    
T  32623614 tagagagagatttcaccgtagaaaatcatcaa 32623645  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 122
Target Start/End: Original strand, 19769042 - 19769124
Alignment:
Q  40 tagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaaggagggaagtttctatttagcatatgggttg 122  Q
    ||||||||||||||||||||| || |||||||||||| | |||||||||||| | ||| ||| |||||| | |||| ||||||    
T  19769042 tagagagagatttcaccgtaggaattcatcaaattcttcgaactagaggtaatggggggagtctctattcatcataagggttg 19769124  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 19892950 - 19892897
Alignment:
Q  40 tagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaagg 93  Q
    |||||||| |||||| |||||||| |||||||||||| | ||||||||||||||    
T  19892950 tagagagaaatttcatcgtagaaattcatcaaattctccgaactagaggtaagg 19892897  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 143
Target Start/End: Complemental strand, 9548853 - 9548733
Alignment:
Q  21 aggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgc--aaactagaggtaaggagggaagtttctatttagcatatgg 118  Q
    |||||||||||||  ||||||||||||  ||||||||||| |||||||||| ||| ||  ||||||||| ||||| ||| ||| ||| || | |||| ||    
T  9548853 aggcatagcgagaaaaacgtagagaga--tttcaccgtaggaaatcatcaatttc-gcaaaaactagagataagg-ggggagtctctgttcatcataagg 9548758  T
Q  119 gttgcatgaacatgtggtagtgaag 143  Q
    |||| |||| ||| |||||||||||    
T  9548757 gttgtatgatcatatggtagtgaag 9548733  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 42147515 - 42147468
Alignment:
Q  21 aggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcat 68  Q
    ||||||||||||| |||| ||||||||||||||||| |||||||||||    
T  42147515 aggcatagcgagaagaacctagagagagatttcaccatagaaaatcat 42147468  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 175
Target Start/End: Complemental strand, 17290716 - 17290570
Alignment:
Q  29 cgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaaggagggaagtttctatttagcatatgggttgcatgaa 128  Q
    ||||| |||| ||||||||||||| ||||||  |||| ||||| ||||  ||| ||||||||||| ||| ||| |||||| | |||| |||||| |||||    
T  17290716 cgagaagaacctagagagagattttaccgtatgaaattatcaatttctcaaaattagaggtaagg-ggggagtctctattcaccataagggttgtatgaa 17290618  T
Q  129 catgt-ggtagtgaaggatctttgcttgctttcatgatcttttgatga 175  Q
     || | ||| ||||||| | |||| ||| |||||| || |||||||||    
T  17290617 tatatgggttgtgaagggtttttgtttgttttcataattttttgatga 17290570  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 40391470 - 40391402
Alignment:
Q  25 atagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaagg 93  Q
    ||||||||| |||| || |||||||||||| | ||||||| |||||| |||   |||||||||||||||    
T  40391470 atagcgagaagaacctaaagagagatttcaacttagaaaaccatcaatttcgcaaaactagaggtaagg 40391402  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 122
Target Start/End: Original strand, 18147616 - 18147698
Alignment:
Q  40 tagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaaggagggaagtttctatttagcatatgggttg 122  Q
    |||||||||||||| |||||| || |||||||||||| | |||||||||||| | ||| ||| |||||| | |||| ||||||    
T  18147616 tagagagagatttcgccgtaggaattcatcaaattctccgaactagaggtaatggggggagtctctattcatcataagggttg 18147698  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 11508723 - 11508781
Alignment:
Q  40 tagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaaggaggga 98  Q
    ||||||||||||| || |||| || |||||||||||| | |||||||||||||| ||||    
T  11508723 tagagagagattttacagtagtaattcatcaaattctccgaactagaggtaagggggga 11508781  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 44 - 122
Target Start/End: Complemental strand, 39176519 - 39176441
Alignment:
Q  44 gagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaaggagggaagtttctatttagcatatgggttg 122  Q
    ||||||||||||| |||||||||||||| |||   ||||||||||||| | ||||||| |||||| | |||| ||||||    
T  39176519 gagagatttcaccatagaaaatcatcaatttcgcaaaactagaggtaatgggggaagtctctattcatcataagggttg 39176441  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 39435973 - 39436023
Alignment:
Q  43 agagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaagg 93  Q
    |||||||||||||||||| |||||||||| |||   |||||||||||||||    
T  39435973 agagagatttcaccgtaggaaatcatcaatttcacaaaactagaggtaagg 39436023  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 131
Target Start/End: Original strand, 30993251 - 30993339
Alignment:
Q  42 gagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaaggagggaagtttctatttagcatatgggttgcatgaacat 131  Q
    |||||||| ||||| |||  || |||||||||||| |||||||||||||||| ||| ||| |||||| | |||| |||||| ||||||||    
T  30993251 gagagagacttcactgtatgaattcatcaaattctccaaactagaggtaagg-ggggagtctctattcaccataagggttgtatgaacat 30993339  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 15777339 - 15777406
Alignment:
Q  25 atagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaagg 93  Q
    ||||||||| |||| ||||||||||||||||||||| || | ||| | || ||||||||||||||||||    
T  15777339 atagcgagaagaacctagagagagatttcaccgtaggaatttatc-acttttgcaaactagaggtaagg 15777406  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 18705520 - 18705586
Alignment:
Q  24 catagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggta 90  Q
    ||||| |||| |||||||||||||||||||||| ||  |||||||||| |||   ||||||||||||    
T  18705520 catagtgagaagaacgtagagagagatttcaccatatgaaatcatcaatttcgtaaaactagaggta 18705586  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 3593149 - 3593101
Alignment:
Q  44 gagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaagg 93  Q
    |||||||||| |||||| |||||||||| ||| |||||||||||||||||    
T  3593149 gagagatttctccgtaggaaatcatcaa-ttcggcaaactagaggtaagg 3593101  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 144
Target Start/End: Original strand, 18534434 - 18534535
Alignment:
Q  41 agagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaaggagggaagtttctatttagcatatgggttgcatgaacatgtggtagtg 140  Q
    |||||||||||  ||| ||| |||||||||| |||   ||||||||||||||  ||| ||| |||||| | |||| || ||| |||||||| ||||||||    
T  18534434 agagagagattcaaccataggaaatcatcaatttcgcaaaactagaggtaag--ggggagtctctattcaccataaggattgtatgaacatatggtagtg 18534531  T
Q  141 aagg 144  Q
    ||||    
T  18534532 aagg 18534535  T

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Target: scaffold0323 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 144
Target Start/End: Complemental strand, 16303 - 16223
Alignment:
Q  64 atcatcaaattctgcaaactagaggtaaggagggaagtttctatttagcatatgggttgcatgaacatgt-ggtagtgaagg 144  Q
    |||||||||||||  ||||||||||||||| ||||||| |||||| | || | |||||| |||| ||||| |||||||||||    
T  16303 atcatcaaattctctaaactagaggtaagg-gggaagtctctattcaccaaaagggttgtatgatcatgtgggtagtgaagg 16223  T

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