View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_758 (Length: 205)
Name: NF10145A_low_758
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_758 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 38567266 - 38567062
Alignment:
| Q |
1 |
gtttgagacaattaaaaggaggccagagatagatgcttatgatccaaatggaaaaatattagaggatattcaaggtgaaatagagttgaaagaagtttat |
100 |
Q |
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| T |
38567266 |
gtttgagacaattaaaaggaggccagagatagatgcttatgatccaaatggaaaaatattagaggatattcaaggtgaaatagagttgaaagaagtttat |
38567167 |
T |
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| Q |
101 |
ttcagttatccggcaagacctgaggagctgatatttaatggattctctcttcatataccgagcggaacaaccacagcattggttggacaaagtggaagtg |
200 |
Q |
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| T |
38567166 |
ttcagttatccggcaagacctgaggagctgatatttaatggattctctcttcatataccgagcggaacaaccacagcattggttggacaaagtggaagtg |
38567067 |
T |
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| Q |
201 |
gaaag |
205 |
Q |
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||||| |
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| T |
38567066 |
gaaag |
38567062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 38526141 - 38525937
Alignment:
| Q |
1 |
gtttgagacaattaaaaggaggccagagatagatgcttatgatccaaatggaaaaatattagaggatattcaaggtgaaatagagttgaaagaagtttat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
38526141 |
gtttgagacaattaaaaggaggccagagatagatgcttatgatccaaatggaaaaatattagaggatattcaaggtgagatagagttgaaagaagtttat |
38526042 |
T |
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| Q |
101 |
ttcagttatccggcaagacctgaggagctgatatttaatggattctctcttcatataccgagcggaacaaccacagcattggttggacaaagtggaagtg |
200 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||| | ||||||||||||||||||||||||| |
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| T |
38526041 |
ttcagttatccggcaagacctgaggagctgatattcaatggattctctcttcatatatcaagcggaacaaccgcggcattggttggacaaagtggaagtg |
38525942 |
T |
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| Q |
201 |
gaaag |
205 |
Q |
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||||| |
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| T |
38525941 |
gaaag |
38525937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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