View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_76 (Length: 394)
Name: NF10145A_low_76
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_76 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 28 - 394
Target Start/End: Complemental strand, 11822028 - 11821662
Alignment:
| Q |
28 |
aaagtaccttagcttgattcaaaaaaccaactgttgcattaggtgctggatcattccaattcactgagaattgaattttgaacaaatttccggcacggtg |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
11822028 |
aaagtaccttagcttgattcaaaaaaccaactgttgcattaggtgctggatcattccaattcactgagaattgaattttgaacaaattcccggcacggtg |
11821929 |
T |
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| Q |
128 |
aggaaatggcgttgcatcggccggaatctgagccatttttccaccataagggttgaaaacaaatccaacttttcccaactcaatcatctttttccaaatc |
227 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
11821928 |
aggaaatggcgttgcatcggccggaatctcagccatttttccaccataagggttgaaaacaaatccaacttttcccaactcaatcatctttttccatatc |
11821829 |
T |
|
| Q |
228 |
ccttccaaatcatcttttgaaatagctttctgaacataatcagattttctcttaccgaatgtcgcggaattaagattcctatccaaaagactctccggtt |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
11821828 |
ccttccaaatcatcttttgaaatagctttctgaacataatcagatttcctcttaccgaaagccgcggaattaagattcctatccaaaagactctccggtt |
11821729 |
T |
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| Q |
328 |
tcgcgcctttgttaaaatcatcagcgtcattataccatataacagaattaaaccaactcaattcaat |
394 |
Q |
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| T |
11821728 |
tcgcacctttgttaaaatcatcagcatcattataccatataacagaattaatccaactcaattcaat |
11821662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 29 - 394
Target Start/End: Original strand, 11834337 - 11834702
Alignment:
| Q |
29 |
aagtaccttagcttgattcaaaaaaccaactgttgcattaggtgctggatcattccaattcactgagaattgaattttgaacaaatttccggcacggtga |
128 |
Q |
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| T |
11834337 |
aagtaccttagcttgattcaaaaaaccaactgttgcattaggtgatggatcatcccaattcactgaatattgaattttgaacaaatttccagcacggtga |
11834436 |
T |
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| Q |
129 |
ggaaatggcgttgcatcggccggaatctgagccatttttccaccataagggttgaaaacaaatccaacttttcccaactcaatcatctttttccaaatcc |
228 |
Q |
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|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||| |
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| T |
11834437 |
ggaaatggcgttgcatcggccggaatctcagcgatttttccaccataagggttgaaaacaaatccaatttttcctaactcaatcatctttttccatatcc |
11834536 |
T |
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| Q |
229 |
cttccaaatcatcttttgaaatagctttctgaacataatcagattttctcttaccgaatgtcgcggaattaagattcctatccaaaagactctccggttt |
328 |
Q |
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| T |
11834537 |
cttccaaatcatcttttgaaatagctttctgaacataatcagattttctcttacctaaacccgccgaattaacattcctatccaaaagattcaccggttt |
11834636 |
T |
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| Q |
329 |
cgcgcctttgttaa-aatca--tcagcgtcattataccatataacagaattaaaccaactcaattcaat |
394 |
Q |
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| T |
11834637 |
cttgccatttttaagactcaattca---tcgttataccatagaacagaattaatccaactcaattcaat |
11834702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 160 - 280
Target Start/End: Complemental strand, 11918241 - 11918121
Alignment:
| Q |
160 |
ccatttttccaccataagggttgaaaacaaatccaacttttcccaactcaatcatctttttccaaatcccttccaaatcatcttttgaaatagctttctg |
259 |
Q |
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||||||||||||||||||| ||||||| | | || ||||| ||||||| ||||||||||||||||| ||||||||| | ||||| ||||| | || || |
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| T |
11918241 |
ccatttttccaccataaggattgaaaaacattacacctttttccaactcgatcatctttttccaaattccttccaaaccctctttagaaattggttcctt |
11918142 |
T |
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| Q |
260 |
aacataatcagattttctctt |
280 |
Q |
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| T |
11918141 |
tacataatcagattttctctt |
11918121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 236
Target Start/End: Complemental strand, 11947606 - 11947572
Alignment:
| Q |
202 |
ccaactcaatcatctttttccaaatcccttccaaa |
236 |
Q |
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|||||| |||||||||||||||||||||||||||| |
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| T |
11947606 |
ccaacttaatcatctttttccaaatcccttccaaa |
11947572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 161 - 280
Target Start/End: Complemental strand, 38126207 - 38126088
Alignment:
| Q |
161 |
catttttccaccataagggttgaaaacaaatccaacttttcccaactcaatcatctttttccaaatcccttccaaatcatcttttgaaatagctttctga |
260 |
Q |
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|||||||||||| |||||||||||| ||||| ||||||||||| ||||||| ||| || | ||||||||||| ||||||||||||| | |||| |
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| T |
38126207 |
catttttccaccgtaagggttgaaagtcaatcctacttttcccaattcaatcagcttcttatatatcccttccaacccatcttttgaaattggattctcc |
38126108 |
T |
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| Q |
261 |
acataatcagattttctctt |
280 |
Q |
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|||||||||||||| ||||| |
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| T |
38126107 |
acataatcagatttcctctt |
38126088 |
T |
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