View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_766 (Length: 203)
Name: NF10145A_low_766
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_766 |
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| [»] scaffold0907 (1 HSPs) |
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Alignment Details
Target: scaffold0907 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0907
Description:
Target: scaffold0907; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 69 - 123
Target Start/End: Original strand, 3263 - 3317
Alignment:
| Q |
69 |
aatatgaaaccaaattttggtcttgtacatgttccacaaccaaggtttatggaga |
123 |
Q |
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| T |
3263 |
aatatgaaaccaagttttggtcttgtacatgttccacaaccaaggtttatggaga |
3317 |
T |
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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 186
Target Start/End: Complemental strand, 33167234 - 33167174
Alignment:
| Q |
126 |
caaagagtcgtgtcatattcctcgggaccggtgaacatatggatgagtttgaagtttttga |
186 |
Q |
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| T |
33167234 |
caaagagtcctgtcatattcatagcaaccggtgaacatatggatgagtttgaagcttttga |
33167174 |
T |
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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 33115506 - 33115457
Alignment:
| Q |
137 |
gtcatattcctcgggaccggtgaacatatggatgagtttgaagtttttga |
186 |
Q |
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| T |
33115506 |
gtcatattcataggaactggtgaacatatggatgagtttgaagtttttga |
33115457 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 186
Target Start/End: Original strand, 44827185 - 44827245
Alignment:
| Q |
126 |
caaagagtcgtgtcatattcctcgggaccggtgaacatatggatgagtttgaagtttttga |
186 |
Q |
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| T |
44827185 |
caaagagtcctgtcatattcataggaactggtgaacatatggatcagtttgaagtatttga |
44827245 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 126 - 189
Target Start/End: Complemental strand, 2203266 - 2203203
Alignment:
| Q |
126 |
caaagagtcgtgtcatattcctcgggaccggtgaacatatggatgagtttgaagtttttgatgt |
189 |
Q |
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| T |
2203266 |
caaagagtcctgtcatattcattggaactggagaacacatggatgaatttgaagtttttgatgt |
2203203 |
T |
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