View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_767 (Length: 202)
Name: NF10145A_low_767
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_767 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 3e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 28274555 - 28274355
Alignment:
| Q |
1 |
tcaaccctttcattcccttccctattcgagtatgagacatatagctaagaaacatgggataaatgttacctggaagcacaatcactaactaccccaaaca |
100 |
Q |
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| T |
28274555 |
tcaaccctttcattcccttccctattcgagtatgagacatatagctaagaagcatgggataaatgttacctggaagcacaatcactaactaccccaaaca |
28274456 |
T |
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| Q |
101 |
aattaaaaatttcataccaaatatcacttgcgaaaccacatttaacaaacaagtgatcttgtgtttccgaaacctccgcacgccacacaaaactcgtatc |
200 |
Q |
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| T |
28274455 |
aattaaaaa-ttcataccaaatatcacttgcgaaaccacatttaacaaacaagtgatcttgcatttccgaaacctccgcacgccacacataactcgtatc |
28274357 |
T |
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| Q |
201 |
ct |
202 |
Q |
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|| |
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| T |
28274356 |
ct |
28274355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 28271318 - 28271115
Alignment:
| Q |
1 |
tcaaccctttcattcccttccctattcgagtatgagacatata--gctaagaaacatgggataaatgttacctggaagcacaatcactaactaccccaaa |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28271318 |
tcaaccctttcattcccttccctattcgagtatgagacatatatagctaagaggcatgggataaatgttacctggaagcacaatcactaactaccccaaa |
28271219 |
T |
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| Q |
99 |
caaattaaaaatttcataccaaatatcacttgcgaaaccacatttaacaaacaagtgatcttgtgtttccgaaacctccgcacgccacacaaaactcgta |
198 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||| ||||| || |
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| T |
28271218 |
caaattaaaaatttcataccaaatagcacttgcgaaaccacatttaacaaacaagcgatcttgcgtttcagaaacctccgcacgccacacacaactcata |
28271119 |
T |
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| Q |
199 |
tcct |
202 |
Q |
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|||| |
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| T |
28271118 |
tcct |
28271115 |
T |
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