View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_772 (Length: 201)

Name: NF10145A_low_772
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_772
NF10145A_low_772
[»] chr7 (2 HSPs)
chr7 (1-188)||(32885106-32885296)
chr7 (129-188)||(9563960-9564019)
[»] chr4 (5 HSPs)
chr4 (1-188)||(1363138-1363325)
chr4 (2-188)||(3221751-3221937)
chr4 (2-188)||(26893581-26893767)
chr4 (2-188)||(39250063-39250249)
chr4 (58-154)||(46625196-46625292)
[»] chr8 (2 HSPs)
chr8 (1-188)||(4533453-4533640)
chr8 (2-188)||(23665483-23665669)
[»] chr1 (5 HSPs)
chr1 (2-188)||(52842065-52842242)
chr1 (2-188)||(2902626-2902812)
chr1 (19-188)||(16131551-16131720)
chr1 (114-188)||(10531638-10531712)
chr1 (3-86)||(44758826-44758909)
[»] chr3 (4 HSPs)
chr3 (2-181)||(29085775-29085953)
chr3 (114-188)||(46616076-46616150)
chr3 (2-48)||(46615978-46616024)
chr3 (2-67)||(21459833-21459898)
[»] chr2 (2 HSPs)
chr2 (2-105)||(14511169-14511272)
chr2 (18-85)||(37089141-37089208)


Alignment Details
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 32885106 - 32885296
Alignment:
Q  1 tcattcacaactagctg---acaatcagtttcaaaaactacccgattgagacgaagatcgagagcaatttgaagggcttgttgtagagtgatggcttcac 97  Q
    |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32885106 tcattcacaactagctgtcgacaatcagtttcaaaaactacccgattgagacgaagatcgagagcaatttgaagggcttgttgtagagtgatggcttcac 32885205  T
Q  98 cctcaactacgattgaaatagaggaaaaaaccattgagtgagcttggataagatgtccaaagttgtctcaaaaacagataccaacaccaaa 188  Q
    ||||||||||| |||||||||||| ||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  32885206 cctcaactacggttgaaatagagggaaaaaccatcgagtgagcttgaataagatgtccaaagctgtctcaaaaacagataccaacaccaaa 32885296  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 129 - 188
Target Start/End: Complemental strand, 9564019 - 9563960
Alignment:
Q  129 cattgagtgagcttggataagatgtccaaagttgtctcaaaaacagataccaacaccaaa 188  Q
    |||||||| ||||||||||||||||||||  ||||||| |||||| ||||||||||||||    
T  9564019 cattgagttagcttggataagatgtccaagattgtctcgaaaacatataccaacaccaaa 9563960  T

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Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 1363325 - 1363138
Alignment:
Q  1 tcattcacaactagctgacaatcagtttcaaaaactacccgattgagacgaagatcgagagcaatttgaagggcttgttgtagagtgatggcttcaccct 100  Q
    ||||||||||| ||||||||||||||||||||||| || |||||||||| |||||||||||||||||| || |||||||||| ||   | ||||||||||    
T  1363325 tcattcacaacaagctgacaatcagtttcaaaaacaacgcgattgagaccaagatcgagagcaatttggagagcttgttgtaaagcagtagcttcaccct 1363226  T
Q  101 caactacgattgaaatagaggaaaaaaccattgagtgagcttggataagatgtccaaagttgtctcaaaaacagataccaacaccaaa 188  Q
    ||  | || |||||||||||| |||| |||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||    
T  1363225 cagttgcggttgaaatagagggaaaacccattgagtgagcttggataagatgtccaaggctgtctcgaaaacagataccaacaccaaa 1363138  T

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Target: chr4; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 2 - 188
Target Start/End: Complemental strand, 3221937 - 3221751
Alignment:
Q  2 cattcacaactagctgacaatcagtttcaaaaactacccgattgagacgaagatcgagagcaatttgaagggcttgttgtagagtgatggcttcaccctc 101  Q
    |||||||||| ||| ||||||||||||||||||| || |||||||||| |||||||||||||||||| ||||||||||||||||   | |||||||||||    
T  3221937 cattcacaacaagcagacaatcagtttcaaaaacaacgcgattgagaccaagatcgagagcaatttggagggcttgttgtagagcagtagcttcaccctc 3221838  T
Q  102 aactacgattgaaatagaggaaaaaaccattgagtgagcttggataagatgtccaaagttgtctcaaaaacagataccaacaccaaa 188  Q
    |||| || |||||||| ||| |||||| |||||||||||||||||||||||||||| | ||||||  ||| ||||||||||||||||    
T  3221837 aactgcggttgaaataaagggaaaaactattgagtgagcttggataagatgtccaaggctgtctcggaaatagataccaacaccaaa 3221751  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 188
Target Start/End: Original strand, 26893581 - 26893767
Alignment:
Q  2 cattcacaactagctgacaatcagtttcaaaaactacccgattgagacgaagatcgagagcaatttgaagggcttgttgtagagtgatggcttcaccctc 101  Q
    ||||||||||||| || || ||| |||| || ||||||||||| || | |||  | ||||||||||| | |||||||||||||| | | ||||||| |||    
T  26893581 cattcacaactagttggcagtcactttcgaatactacccgattcaggccaagtacaagagcaatttggaaggcttgttgtagagcggtagcttcacactc 26893680  T
Q  102 aactacgattgaaatagaggaaaaaaccattgagtgagcttggataagatgtccaaagttgtctcaaaaacagataccaacaccaaa 188  Q
    | || || ||| || ||| | ||||| ||| |||| ||||||||||||||| |||| | | |||| |||||||||| ||||||||||    
T  26893681 agctgcggttgtaaaagaaggaaaaatcatagagttagcttggataagatgcccaaggctatctcgaaaacagatatcaacaccaaa 26893767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 188
Target Start/End: Complemental strand, 39250249 - 39250063
Alignment:
Q  2 cattcacaactagctgacaatcagtttcaaaaactacccgattgagacgaagatcgagagcaatttgaagggcttgttgtagagtgatggcttcaccctc 101  Q
    ||||||| ||| | ||||||||| ||||||| |||||| |||| || | ||| |  ||| ||||||| ||| |||||||||||| | | ||||||| |||    
T  39250249 cattcaccacttgttgacaatcactttcaaatactacctgattcaggccaaggtgaagatcaatttggaggccttgttgtagagcggtagcttcacactc 39250150  T
Q  102 aactacgattgaaatagaggaaaaaaccattgagtgagcttggataagatgtccaaagttgtctcaaaaacagataccaacaccaaa 188  Q
    | || |||| | || | | ||||| ||||| |||| |||||||||||||| ||||| |||||||| |||| ||||||||| ||||||    
T  39250149 agctccgatagtaagaaaagaaaataccatagagttagcttggataagatatccaaggttgtctcgaaaatagataccaataccaaa 39250063  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 58 - 154
Target Start/End: Original strand, 46625196 - 46625292
Alignment:
Q  58 agagcaatttgaagggcttgttgtagagtgatggcttcaccctcaactacgattgaaatagaggaaaaaaccattgagtgagcttggataagatgtc 154  Q
    |||| |||||| ||||||||||||| |||| | |||||||  ||| || |  ||| |||||||| ||||||| ||||||||||||||||||| ||||    
T  46625196 agagaaatttggagggcttgttgtatagtggtagcttcacattcagctgcagttggaatagagggaaaaacctttgagtgagcttggataagttgtc 46625292  T

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Target: chr8 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 4533640 - 4533453
Alignment:
Q  1 tcattcacaactagctgacaatcagtttcaaaaactacccgattgagacgaagatcgagagcaatttgaagggcttgttgtagagtgatggcttcaccct 100  Q
    ||||||||||| ||||| || |||||||||||||| || |||||||||  |||||||| ||||||||| || | |||||||||||   | ||||||||||    
T  4533640 tcattcacaacaagctgccactcagtttcaaaaacaacgcgattgagatcaagatcgaaagcaatttggagagtttgttgtagagcagtagcttcaccct 4533541  T
Q  101 caactacgattgaaatagaggaaaaaaccattgagtgagcttggataagatgtccaaagttgtctcaaaaacagataccaacaccaaa 188  Q
    || || ||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||    
T  4533540 cagctgcgattgaaatagagggaaaaaccattgagtgagcttggataagatgtccaaggctgtctcgaaaacagataccaacaccaaa 4533453  T

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Target: chr8; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 2 - 188
Target Start/End: Original strand, 23665483 - 23665669
Alignment:
Q  2 cattcacaactagctgacaatcagtttcaaaaactacccgattgagacgaagatcgagagcaatttgaagggcttgttgtagagtgatggcttcaccctc 101  Q
    |||||||||| |||||||||| |||||||||||| || |||||||||  |||||||||||||||||| |||||| ||||||||||  | ||||| |||||    
T  23665483 cattcacaacaagctgacaattagtttcaaaaacaacgcgattgagatcaagatcgagagcaatttggagggctagttgtagagtagtagcttctccctc 23665582  T
Q  102 aactacgattgaaatagaggaaaaaaccattgagtgagcttggataagatgtccaaagttgtctcaaaaacagataccaacaccaaa 188  Q
    | ||  | |||||||||||| |||||||||||||||| ||||||||||||||| || |||||||| |||||||||||||||||||||    
T  23665583 agctgtggttgaaatagagggaaaaaccattgagtgaacttggataagatgtcaaaggttgtctcgaaaacagataccaacaccaaa 23665669  T

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Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 2 - 188
Target Start/End: Original strand, 52842065 - 52842242
Alignment:
Q  2 cattcacaactagctgacaatcagtttcaaaaactacccgattgagacgaagatcgagagcaatttgaagggcttgttgtagagtgatggcttcaccctc 101  Q
    |||||||||| ||||||||||||||||||||||| || ||          || |||||||||||||||||||||||||||||||  || |||||| ||||    
T  52842065 cattcacaacaagctgacaatcagtttcaaaaacaacgcgc---------aggtcgagagcaatttgaagggcttgttgtagagcaatagcttcatcctc 52842155  T
Q  102 aactacgattgaaatagaggaaaaaaccattgagtgagcttggataagatgtccaaagttgtctcaaaaacagataccaacaccaaa 188  Q
    || | || |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||    
T  52842156 aattgcggttgaaatagagggaaaaaccattgagtgagcttggataagatgtccaaggttgtctcggaaacagataccaacaccaaa 52842242  T

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Target: chr1; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 2 - 188
Target Start/End: Complemental strand, 2902812 - 2902626
Alignment:
Q  2 cattcacaactagctgacaatcagtttcaaaaactacccgattgagacgaagatcgagagcaatttgaagggcttgttgtagagtgatggcttcaccctc 101  Q
    ||||||||||||| ||||||||| ||||||| ||||||||||| || | ||| || ||||||||||| ||||||||||||| || | | ||||||| |||    
T  2902812 cattcacaactagttgacaatcactttcaaatactacccgattcaggccaagttcaagagcaatttggagggcttgttgtatagcggtagcttcacactc 2902713  T
Q  102 aactacgattgaaatagaggaaaaaaccattgagtgagcttggataagatgtccaaagttgtctcaaaaacagataccaacaccaaa 188  Q
    | || |  ||| || ||| | ||| ||||| |||| |||||||||||||||||||| | | |||| ||||||||| |||||||||||    
T  2902712 agctgcatttgtaaaagaaggaaataccatagagttagcttggataagatgtccaaggctatctcgaaaacagatgccaacaccaaa 2902626  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 16131720 - 16131551
Alignment:
Q  19 caatcagtttcaaaaactacccgattgagacgaagatcgagagcaatttgaagggcttgttgtagagtgatggcttcaccctcaactacgattgaaatag 118  Q
    ||||||||||| || |||||||||||||| | |||||  |||| |||||| ||||||||||||| ||   | |||||||  ||| || |  ||| |||||    
T  16131720 caatcagtttcgaatactacccgattgaggccaagattaagagaaatttggagggcttgttgtatagcagtagcttcacattcagctgcagttggaatag 16131621  T
Q  119 aggaaaaaaccattgagtgagcttggataagatgtccaaagttgtctcaaaaacagataccaacaccaaa 188  Q
    ||| || ||||||||||||||||| |||||| ||||||| | |||||| |||||| |||||||| |||||    
T  16131620 agggaataaccattgagtgagctttgataagttgtccaaggctgtctcgaaaacaaataccaacgccaaa 16131551  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 188
Target Start/End: Original strand, 10531638 - 10531712
Alignment:
Q  114 aatagaggaaaaaaccattgagtgagcttggataagatgtccaaagttgtctcaaaaacagataccaacaccaaa 188  Q
    |||||| | ||| ||||| |||| || ||||||||||||||||| |||||||| |||||||||||||||||||||    
T  10531638 aatagaaggaaagaccatagagttagtttggataagatgtccaaggttgtctcgaaaacagataccaacaccaaa 10531712  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 44758909 - 44758826
Alignment:
Q  3 attcacaactagctgacaatcagtttcaaaaactacccgattgagacgaagatcgagagcaatttgaagggcttgttgtagagt 86  Q
    |||||||||||| ||||| ||| |||| || ||||||||||| || | ||  || ||||||||||| |||||||| ||||||||    
T  44758909 attcacaactagttgacagtcactttcgaatactacccgattcaggccaaagtcaagagcaatttggagggcttgatgtagagt 44758826  T

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Target: chr3 (Bit Score: 52; Significance: 5e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 2 - 181
Target Start/End: Original strand, 29085775 - 29085953
Alignment:
Q  2 cattcacaactagctgacaatcagtttcaaaaactacccgattgagacgaagatcgagagcaatttgaagggcttgttgtagagtgatggcttcaccctc 101  Q
    ||||||||||||| |||| |||  ||||||| |||||||||||||| | |||||| ||||||||||||||||||||||||||||  ||  |||||| ||     
T  29085775 cattcacaactagttgaccatccatttcaaatactacccgattgaggccaagatcaagagcaatttgaagggcttgttgtagagcaataccttcacactt 29085874  T
Q  102 aactacgattgaaatagaggaaaaaaccattgagtgagcttggataagatgtccaaagttgtctcaaaaacagataccaa 181  Q
     | |  | ||| || ||| | ||  ||||| |||||||||||||||||||||  |  ||||||||| |||||||||||||    
T  29085875 ga-tgtggttgtaacagaaggaacgaccatggagtgagcttggataagatgtatagggttgtctcagaaacagataccaa 29085953  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 188
Target Start/End: Original strand, 46616076 - 46616150
Alignment:
Q  114 aatagaggaaaaaaccattgagtgagcttggataagatgtccaaagttgtctcaaaaacagataccaacaccaaa 188  Q
    |||| ||| ||||| ||||||||||||||| ||||| ||||||| |||||||| |||| |||||| |||||||||    
T  46616076 aataaagggaaaaaacattgagtgagcttgtataagttgtccaaggttgtctcgaaaatagatactaacaccaaa 46616150  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 46615978 - 46616024
Alignment:
Q  2 cattcacaactagctgacaatcagtttcaaaaactacccgattgaga 48  Q
    |||||||||||| |||||||| | ||||||| |||||||||||||||    
T  46615978 cattcacaactaactgacaataactttcaaatactacccgattgaga 46616024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 21459898 - 21459833
Alignment:
Q  2 cattcacaactagctgacaatcagtttcaaaaactacccgattgagacgaagatcgagagcaattt 67  Q
    |||||| |||||| |||||||||||||| || |||||| ||||||| | |||||| |||| |||||    
T  21459898 cattcataactagttgacaatcagtttcgaatactacctgattgaggctaagatcaagagaaattt 21459833  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 14511272 - 14511169
Alignment:
Q  2 cattcacaactagctgacaatcagtttcaaaaactacccgattgagacgaagatcgagagcaatttgaagggcttgttgtagagtgatggcttcaccctc 101  Q
    ||||||||||||| ||||||||| ||| ||| ||||||||||| || | ||  || ||||||||||| |||||||||| ||||| | | ||||||| |||    
T  14511272 cattcacaactagttgacaatcactttgaaatactacccgattcagcccaaagtcaagagcaatttggagggcttgttatagagcggtagcttcacactc 14511173  T
Q  102 aact 105  Q
    ||||    
T  14511172 aact 14511169  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 37089208 - 37089141
Alignment:
Q  18 acaatcagtttcaaaaactacccgattgagacgaagatcgagagcaatttgaagggcttgttgtagag 85  Q
    |||||||| ||| ||||||||||||||||| |  || || ||||||||||| ||||||| ||||||||    
T  37089208 acaatcaggttcgaaaactacccgattgaggcatagttcaagagcaatttggagggcttcttgtagag 37089141  T

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