View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_8 (Length: 482)
Name: NF10145A_low_8
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 19 - 359
Target Start/End: Original strand, 29029682 - 29030023
Alignment:
| Q |
19 |
acatcagagacatataacatagtatatatcattgtaacagtaacttcgcttacaaaaaccaaccataaaaatcaagaagaaacctctcctaaaatcaacg |
118 |
Q |
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| T |
29029682 |
acatcagaaacatataacgtggtatatatcattgtaacagtaacttcgcttacaaaaaccaaccataaaaatcaagaagaaacctctcctaaaatcaaca |
29029781 |
T |
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| Q |
119 |
atccataccaacaaacactcactacacacacattcttaacttgaaattgaag-aaatcatcatcaatcaatcaataacctcattctaaccttgacccata |
217 |
Q |
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| T |
29029782 |
atccataccaacaaacactcactacacacacattcttaacttgaaattgaagcaaatcatcatcaatcaatcaataacctcattctaaccttgacccata |
29029881 |
T |
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| Q |
218 |
ataggtctatctaaacaatttcaaattgacatttcttgtaaaaaagattggttaagatatacatgaaacatgtgggcccaagcccataaaaatagcttag |
317 |
Q |
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| T |
29029882 |
ataggtctatctaaacaatttcaaattgacatttcttgtaaaaaagattggttaagatatacatgaaacatgtgggcccaagcccataaaaatagcttag |
29029981 |
T |
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| Q |
318 |
gatgacatcatcttgttaagacaggtaggcaatgtcgaaaac |
359 |
Q |
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| T |
29029982 |
gatgatatcatcttgttaagacaggtaggcaatgtcgaaaac |
29030023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 437 - 465
Target Start/End: Original strand, 29030101 - 29030129
Alignment:
| Q |
437 |
gatctatatctatcttcattctctttgat |
465 |
Q |
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| T |
29030101 |
gatctatatctatcttcattctctttgat |
29030129 |
T |
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