View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_80 (Length: 387)
Name: NF10145A_low_80
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_80 |
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Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 10 - 373
Target Start/End: Original strand, 24652616 - 24652979
Alignment:
| Q |
10 |
atggacatcatgaacatgttcatggacatggacaaagatgaatattgttccagtggctgggaaaatattgtaggagaggattgcaagaaaaacaacagtg |
109 |
Q |
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| T |
24652616 |
atggacatcatgaacatgttcatggacatggacaaagatgaatattgttccagtggctgggaaaatattgtaggagacgattgcaagaaaaacaacagtg |
24652715 |
T |
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| Q |
110 |
gctctatttctctacctccatttgggctagccacttacaaaatgcagagtgatctttggctaaacactgatccaaatgattatgaaaagatatcatatct |
209 |
Q |
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| T |
24652716 |
gctctatttctctacctccatttgggctagccacttacaaaatgcagagtgatctttggctaaacactgatccaaatgattatgaaaagatatcatatct |
24652815 |
T |
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| Q |
210 |
atgtagtgctgcagactcatggttgaaacaactcaatgtccaccaccatgacttcgactttttcacatcgagctctgttgtgtgaattggtttgtctatc |
309 |
Q |
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| T |
24652816 |
atgtagtgctgcagactcatggttgaaacaactcaatgtccaccaccatgacttcgactttttcacatcgagctctgttgtgtgaattggtttgtctatc |
24652915 |
T |
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| Q |
310 |
cttacctaactgtccattgatttagctttgagactctgatgagaatggactgaagttgatgtcc |
373 |
Q |
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| T |
24652916 |
cttacctaactgtccattgatttagctttgagactctgatgagaatggactgaagtttatgtcc |
24652979 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 275
Target Start/End: Original strand, 34565198 - 34565256
Alignment:
| Q |
217 |
gctgcagactcatggttgaaacaactcaatgtccaccaccatgacttcgactttttcac |
275 |
Q |
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| T |
34565198 |
gctgcagactcgtggttgaagcaactcaacgctcaccaccatgacttcaactttttcac |
34565256 |
T |
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