View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10145A_low_84 (Length: 386)
Name: NF10145A_low_84
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_84 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 25 - 386
Target Start/End: Complemental strand, 46588559 - 46588198
Alignment:
| Q |
25 |
gtttactgcattaatactcaacttagcacagcctaactactcaagtattaaccacataaaagtatgtcaatcaaaattgtttatgtggatcataatatat |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46588559 |
gtttactgcattaatactcaacttagcacagcctaactactcaagtattaaccacataaaagtatgtcaatcaaaattgtttatgtggatcataatatat |
46588460 |
T |
|
| Q |
125 |
tcataaaaggtgaaaattgtaagagtttgcctaattaaactttctgcttggagagtaagatatcttttcagattgtcacatataaacggcaagctaacaa |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46588459 |
tcataaaaggtgaaaattgtaagagtttgcctaattaaactttctgcttggagagtaagatatcttttcagattgtcacatataaacggcaagctaacaa |
46588360 |
T |
|
| Q |
225 |
tattttacgaaagttaacatggtgctttcaaatgaatatgcaataaaataaaacagataaaaccagaaacatacccacttttcttgaaatgctctataat |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46588359 |
tattttacgaaagttaacatggtgctttcaaatgaatatgcaataaaataaaacagataaaaccagaaacatacccacttttcttgaaatgctctataat |
46588260 |
T |
|
| Q |
325 |
tttacacacagagtcaattggtacggaaaaacccaacccatcagcagccaacactttcatga |
386 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46588259 |
tttacacacagagtcgattggtacggaaaaacccaacccatcagcagccaacactttcatga |
46588198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University