View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_88 (Length: 382)
Name: NF10145A_low_88
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_88 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 16 - 367
Target Start/End: Original strand, 34629045 - 34629396
Alignment:
| Q |
16 |
gacatcaagcttcacaaatttaagaacaaaatgatatcgaataacagctccacaaatgtattccagtgacaaagacaatcaactaagctcaaagagagtt |
115 |
Q |
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| T |
34629045 |
gacatcaagcttcacaaatttaagaacaaaatgatatcgaataacagctccacaaatgtattccagtgacaaagacaatcaactaagctcaaagagggtt |
34629144 |
T |
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| Q |
116 |
tagaaaacacttacaacttacaagggaaattagtggtaaaaaagccatcaaaacacaactaattaaatgccaactaataaagaagtggtggtaggttact |
215 |
Q |
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| T |
34629145 |
tagaaaacacttacaacttacaagggaaattagtggtaaaaaagccatcaaaacacaactaattaaatgccaactaataaagaagtggtggtaggttact |
34629244 |
T |
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| Q |
216 |
cacgagccgcataactataaactctactagaactatccatgttattaaaaaattaccacaatattttatacagcagcataaannnnnnnnnnnnncattt |
315 |
Q |
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| T |
34629245 |
cacgagccgcataactataaactctactagaactatccatgttattaaaaaattaccacaatattttatacagcagcataaatttttctttttttcattt |
34629344 |
T |
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| Q |
316 |
ggtccttttccagcagcattattggttcctaattgtttatgtctgatgtcca |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34629345 |
ggtccttttccagcagcattattggttcctaattgtttatgtctgatgtcca |
34629396 |
T |
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