View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_90 (Length: 381)
Name: NF10145A_low_90
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_90 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 8 - 381
Target Start/End: Complemental strand, 21582881 - 21582506
Alignment:
| Q |
8 |
ggctggtcc-tggagtttagcttggatcgatagacataagagaatagaaggagggacaactttttcaaatcaaacaaatgttcatagcaaaggtcgtgct |
106 |
Q |
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| T |
21582881 |
ggctggtccgtggagtttagcttggatcgatagacataagagaatagaaggagggacaactttttcaattccaacaaaagttaatagcaaaggtcgtgtt |
21582782 |
T |
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| Q |
107 |
gctgccccaagtgtttcaaacaagaagggtgggggtt-cttgcgtcactgtgctcgtcggttgaagcatattgcgcgtctccctgacattgataaaaagg |
205 |
Q |
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| T |
21582781 |
gctgccccaagagtttcaaacaagaagggtgggggttacttgcgtcactgtgcccgtcggttgaaacatattgcgcgtctccctgacgctgatagaaagg |
21582682 |
T |
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| Q |
206 |
tagtgcttcgcgctttacgtaagactactaagaagaggaagaaggtggctggtggctctcaagggattgtttctttctctgataaatctcctcaaagtgg |
305 |
Q |
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| T |
21582681 |
aagtgcttcgcgctttacgtaagactactaagaagaggaagaaggtggctggtggctctcaagggattgtttctttctctgataaatctcctcaaagtgg |
21582582 |
T |
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| Q |
306 |
atcccaagcgtctgtaaataataatgactggtctaataggttggttgttcatggcaatgataagataaaggcagat |
381 |
Q |
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| T |
21582581 |
atcccaagcatctgtaaataataatgactggtctaattggttggttgttcatggcaatgataaggtaaaggcagat |
21582506 |
T |
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