View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_92 (Length: 380)
Name: NF10145A_low_92
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_92 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 25 - 295
Target Start/End: Original strand, 21232350 - 21232620
Alignment:
| Q |
25 |
atattaaattactttaggcatttcccggaaactggaataacagtgcttgaagcgaaacgccttgtaactatagatagcaagagcaagattggaatgcatt |
124 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||| || |||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
21232350 |
atattaaattactttaggcatttcccggaaaatggaataacagtcctcgaagagaaaagccttgtaactatagatagcaagagcaagattggaatgcatt |
21232449 |
T |
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| Q |
125 |
cgttgatattagcaatgagaagagagatcataaggaaacaatcgatgatgggtatgggtatggctgaggctgaggctgaggctgaggccgaggttagtga |
224 |
Q |
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| T |
21232450 |
ctttgatatgagaaatgagaagagagatcataaggaaacagtcgatgatgggtatggctgaggctgaggctgaggctgaggccgaggccgaggttagtga |
21232549 |
T |
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| Q |
225 |
ggtatgtccactatgatatgcgtattagagatagaagagaaagatgctaaggaaactacatcaataaactt |
295 |
Q |
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| T |
21232550 |
ggtatgtacactatgatatgcgtattagagatagaaaagaaagatgctaaggaaactacatcaataaactt |
21232620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 31 - 246
Target Start/End: Original strand, 21226658 - 21226861
Alignment:
| Q |
31 |
aattactttaggcatttcccggaaactggaataacagtgcttgaagcgaaacgccttgtaactatagatagcaagagcaagattggaatgcattcgttga |
130 |
Q |
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| T |
21226658 |
aattattttaggcatttccgggaatattgaataacagtccttgaagagaaaagccttgtaaccgtagatagcaagaacaagattggaatgcattctttga |
21226757 |
T |
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| Q |
131 |
tattagcaatgagaagagagatcataaggaaacaatcgatgatgggtatgggtatggctgaggctgaggctgaggctgaggccgaggttagtgaggtatg |
230 |
Q |
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| T |
21226758 |
tatgagaaatgggaagagagatcataaggcaacagtcgatgatgggtat------------ggctgaggctgaggccgaggccgaggttagtgatgtatg |
21226845 |
T |
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| Q |
231 |
tccactatgatatgcg |
246 |
Q |
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| T |
21226846 |
tccactatgatatgcg |
21226861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 45 - 171
Target Start/End: Original strand, 10034347 - 10034473
Alignment:
| Q |
45 |
tttcccggaaactggaataacagtgcttgaagcgaaacgccttgtaactatagatagcaagagcaagattggaatgcattcgttgatattagcaatgaga |
144 |
Q |
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| T |
10034347 |
tttcccggaaattggaataacaatccttgacgagaaaagccttgtaactattgatagcaagaacaagattggaatgcatactttggtacgagcagtggga |
10034446 |
T |
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| Q |
145 |
agagagatcataaggaaacaatcgatg |
171 |
Q |
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| T |
10034447 |
agagaaatcataaggcaacagtcgatg |
10034473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 27 - 171
Target Start/End: Complemental strand, 7890260 - 7890116
Alignment:
| Q |
27 |
attaaattactttaggcatttcccggaaactggaataacagtgcttgaagcgaaacgccttgtaactatagatagcaagagcaagattggaatgcattcg |
126 |
Q |
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| T |
7890260 |
attaaattactctgggcatttcccggaaattgcaatatcaatccttgaagataaaagccttttaactatagatggcaacaacaggattggaatgcatact |
7890161 |
T |
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| Q |
127 |
ttgatattagcaatgagaagagagatcataaggaaacaatcgatg |
171 |
Q |
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| T |
7890160 |
ttgttacgagcaatgggaagagaaatcataaggcaacagtcgatg |
7890116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 7870164 - 7870086
Alignment:
| Q |
45 |
tttcccggaaactggaataacagtgcttgaagcgaaacgccttgtaactatagatagcaagagcaagattggaatgcat |
123 |
Q |
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| T |
7870164 |
tttcctggaaattggaataacaatcgttgaagagaaaagccttgtaactatagataggaagaacaggataggaatgcat |
7870086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 249 - 380
Target Start/End: Original strand, 15939390 - 15939521
Alignment:
| Q |
249 |
ttagagatagaagagaaagatgctaaggaaactacatcaataaacttgtcattacctagtttacttgagatgcaagctacctagttacacttcctctaat |
348 |
Q |
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|||||||||||||||||||||||||||||| | || |||| || || ||||||||||||||||||||||| ||||||| |||||||||||| || || | |
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| T |
15939390 |
ttagagatagaagagaaagatgctaaggaatccacttcaacaagctcttcattacctagtttacttgagatacaagctagctagttacacttactatact |
15939489 |
T |
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| Q |
349 |
cttccatattagaatgtaatcaggctaattgt |
380 |
Q |
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| T |
15939490 |
ctcccatattagtgtgtaattaggctaattgt |
15939521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 309 - 368
Target Start/End: Original strand, 12054620 - 12054679
Alignment:
| Q |
309 |
ttacttgagatgcaagctacctagttacacttcctctaatcttccatattagaatgtaat |
368 |
Q |
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| T |
12054620 |
ttacttgagatacaagctacttagttacatttagtctaatcttcaatattagcatgtaat |
12054679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 309 - 368
Target Start/End: Complemental strand, 20629339 - 20629280
Alignment:
| Q |
309 |
ttacttgagatgcaagctacctagttacacttcctctaatcttccatattagaatgtaat |
368 |
Q |
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| T |
20629339 |
ttacttgagatacaagctacttagttacatttagtctaatcttcaatattagcatgtaat |
20629280 |
T |
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