View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_94 (Length: 378)
Name: NF10145A_low_94
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_94 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 7 - 233
Target Start/End: Original strand, 40777857 - 40778080
Alignment:
| Q |
7 |
tttggtgttgtgcgggtaactatatagctaaagagtagtagttttgaggaattgttctaagaataggctagtgttcgtgaaccgatggttagtgtaatca |
106 |
Q |
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| T |
40777857 |
tttggtggtgtgcgggtaactatatagctaaagagta---gttttgaggaattgttctaagaataggttagtgttcgtgaaccgatggttattgtaatca |
40777953 |
T |
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| Q |
107 |
atatggccattgatgaatcagataatatgcagcttcccgtatcttttcaaattaaagaattcaaagaggcagtattttcaatgaaatccaagtttttatc |
206 |
Q |
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| T |
40777954 |
atagggccattgatgaatcagataatatgcagcttcccgtatcttttcaaataaaagaattcaaagaggcagtattttcaatgcaatccaagtttttatc |
40778053 |
T |
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| Q |
207 |
atcacttctggaatctgtatattctag |
233 |
Q |
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| T |
40778054 |
atcacttctggaatctgtatattctag |
40778080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 232 - 377
Target Start/End: Original strand, 40778177 - 40778318
Alignment:
| Q |
232 |
agacgatgaaggattagagactagcttatagctctttgcaatgtgttgtatgagattcttttgaattaaagaatgtgctccataagtacatatttgatag |
331 |
Q |
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||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40778177 |
agacgataaaggattagagact----tatagctctttgcaatgtgttgtatgagattcttttgaattaaagaatgtgctccataagtacatatttgatag |
40778272 |
T |
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| Q |
332 |
tcaatatgcttttgtgtcataacgttatattttagctaatgttatg |
377 |
Q |
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| T |
40778273 |
tcaatatgcttttgtgtcataacgttatattttagctaatgttatg |
40778318 |
T |
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