View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_97 (Length: 377)
Name: NF10145A_low_97
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_97 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 2 - 348
Target Start/End: Original strand, 52373397 - 52373743
Alignment:
| Q |
2 |
atggacatcatggttgttaatgaagaaacacttgaagctgttgaagatggtgttgaaggagaaatttgggtttcatctccaagtaatgcctctggttacc |
101 |
Q |
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| T |
52373397 |
atggacatcatggttgttaatgaagaaacacttgaagctgttgaagatggtgttgaaggagaaatttgggtttcatctccaagtaatgcctctggttacc |
52373496 |
T |
|
| Q |
102 |
ttggtcacccttctttaacaagagaagtttttcatgcaagaatcagaaacacagttcgtaagcgttttcttcgaacgggtgacaaaggaatcgtaaaagg |
201 |
Q |
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| T |
52373497 |
ttggtcacccttctttaacaagagaagtttttcatgcaagaatcagaaacacagttcgtaagtgttttcttcgaacgggtgacaaaggaatcgtaaaagg |
52373596 |
T |
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| Q |
202 |
agaaaacaggtatctctttgttactggtagaattcaagatactatacagcttcaaaatggtgaaaagattcaaccacattacatagagactgtggttttt |
301 |
Q |
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| T |
52373597 |
agaaaacaggtatctctttgttactggtagaattcaagatactatacagcttcaaaatggtgaaaagattcaaccacattacatagagactgtggttttt |
52373696 |
T |
|
| Q |
302 |
aacagtttcccaaagttactacgaggaggttgtgttgcggcttttaa |
348 |
Q |
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| T |
52373697 |
aacagtttcccaaagttactacgaggaggttgtgttgcggcttttaa |
52373743 |
T |
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