View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145_high_1 (Length: 338)
Name: NF10145_high_1
Description: NF10145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 16 - 330
Target Start/End: Complemental strand, 5269205 - 5268872
Alignment:
| Q |
16 |
actttttcaatatcttcgatactttttccatttgaatgaagctccatcatcattctgtcctgtatttccaaaaccaaaacacaagttaat---------- |
105 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5269205 |
actttttcaatatcttcgatactttttccatttgaatgaagctccatcatcattctgtcctgtatttccaaaaccaaaacacaagttaattatttgttat |
5269106 |
T |
|
| Q |
106 |
---------attcagaatatcgagtgaatgaaaaacagagtatttgtaaaaacagagcatatgaaaagagtgaaaaacataccatgagagaattgaaagg |
196 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5269105 |
aaatataatattcagaatatcgagtgaatgaaaaacagagtatttttaaaaacagagcatatgaaaagagtgaaaaacataccatgagagaattgaaagg |
5269006 |
T |
|
| Q |
197 |
catagtgggaaggagttgattgaacaaatcggtgaaacctaattcatcaagaacccaattatcactatcacaatcaattatggttttatcgaagtcgaaa |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5269005 |
catagtgggaaggagttgattgaacaaatcggtgaaacctaattcatcaacaacccaattatcactatcacaatcaattatggttttatcgaagtcgaaa |
5268906 |
T |
|
| Q |
297 |
actatcacaatattattagacattttttcttctc |
330 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
5268905 |
actatcacaatattattagacattttttcttctc |
5268872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 169 - 327
Target Start/End: Complemental strand, 5249798 - 5249640
Alignment:
| Q |
169 |
aaaaacataccatgagagaattgaaaggcatagtgggaaggagttgattgaacaaatcggtgaaacctaattcatcaagaacccaattatcactatcaca |
268 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||| |||||||||| ||||||||||||||| ||||| |
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| T |
5249798 |
aaaaacataccatgagagaattccaaggcatagtgggaaggagctgattgaacaaatcagtgaaacccaattcatcaataacccaattatcactgtcaca |
5249699 |
T |
|
| Q |
269 |
atcaattatggttttatcgaagtcgaaaactatcacaatattattagacattttttctt |
327 |
Q |
| |
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|||||||||||||||||| || || ||||||| ||||||||||||||||||||||||| |
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| T |
5249698 |
atcaattatggttttatcaaaatcaaaaactacaacaatattattagacattttttctt |
5249640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 155 - 324
Target Start/End: Original strand, 5272736 - 5272905
Alignment:
| Q |
155 |
atatgaaaagagtgaaaaacataccatgagagaattgaaaggcatagtgggaaggagttgattgaacaaatcggtgaaacctaattcatcaagaacccaa |
254 |
Q |
| |
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||||||| ||| | ||||||||||||||| ||||| ||||||| ||||||||||| ||||||||||||||||||||||| |||||||||| | |||| |
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| T |
5272736 |
atatgaagagaataaaaaacataccatgacggaattccaaggcattgtgggaaggagctgattgaacaaatcggtgaaacccaattcatcaatcaaccaa |
5272835 |
T |
|
| Q |
255 |
ttatcactatcacaatcaattatggttttatcgaagtcgaaaactatcacaatattattagacatttttt |
324 |
Q |
| |
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|||||||||||||||||||| |||||||| || ||||| |||| || |||||||||||||||||||||| |
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|
| T |
5272836 |
ttatcactatcacaatcaatgatggttttgtcaaagtcaaaaataataacaatattattagacatttttt |
5272905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 121 - 323
Target Start/End: Original strand, 5276673 - 5276875
Alignment:
| Q |
121 |
tgaatgaaaaacagagtatttgtaaaaacagagcatatgaaaagagtgaaaaacataccatgagagaattgaaaggcatagtgggaaggagttgattgaa |
220 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||| || | |||| |||||||| | |||||| ||||||| || ||||||||||||||||| |
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| T |
5276673 |
tgaatgaaaaacagagtattttacaaaacagagcacatgaaaggaataaaaagcataccataacagaattccaaggcattgtaggaaggagttgattgaa |
5276772 |
T |
|
| Q |
221 |
caaatcggtgaaacctaattcatcaagaacccaattatcactatcacaatcaattatggttttatcgaagtcgaaaactatcacaatattattagacatt |
320 |
Q |
| |
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|||||| |||||||| |||||||||| | |||||||||||| ||||||||||| || ||||| || || || ||||| || ||||| ||||||| |||| |
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| T |
5276773 |
caaatcagtgaaacccaattcatcaatcaaccaattatcactgtcacaatcaatgatcgttttgtcaaaatcaaaaacaataacaatgttattagtcatt |
5276872 |
T |
|
| Q |
321 |
ttt |
323 |
Q |
| |
|
||| |
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|
| T |
5276873 |
ttt |
5276875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 5276558 - 5276633
Alignment:
| Q |
19 |
ttttcaatatcttcgatactttttccatttgaatgaagctccatcatcattctgtcctgtatttccaaaaccaaaa |
94 |
Q |
| |
|
|||||||| ||||| || || ||||||||||||||| ||||||||||||| |||||| | |||||||||||||| |
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| T |
5276558 |
ttttcaatctcttcaatggttattccatttgaatgaaactccatcatcattttgtcctacaattccaaaaccaaaa |
5276633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 5249985 - 5249913
Alignment:
| Q |
16 |
actttttcaatatcttcgatactttttccatttgaatgaagctccatcatcattctgtcctgtatttccaaaa |
88 |
Q |
| |
|
||||||||||| ||||| || |||| ||||||||||||| |||||||||||| || ||||||| ||| |||| |
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| T |
5249985 |
actttttcaatctcttcaatggttttaccatttgaatgaatctccatcatcatcctatcctgtaattcaaaaa |
5249913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 5272603 - 5272656
Alignment:
| Q |
43 |
ccatttgaatgaagctccatcatcattctgtcctgtatttccaaaaccaaaaca |
96 |
Q |
| |
|
||||||||||||| |||||||||||| |||||| || || ||||||||||||| |
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| T |
5272603 |
ccatttgaatgaaattccatcatcattttgtcctataatttcaaaaccaaaaca |
5272656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 187 - 286
Target Start/End: Complemental strand, 19569249 - 19569150
Alignment:
| Q |
187 |
aattgaaaggcatagtgggaaggagttgattgaacaaatcggtgaaacctaattcatcaagaacccaattatcactatcacaatcaattatggttttatc |
286 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||| |
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| T |
19569249 |
aattgaaaggcatagtaagaaggagttgattgaacaaatcgatgaaacctaattcatcaacatcccaattatcactatcacaatcaattaaggttttatc |
19569150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 176 - 298
Target Start/End: Original strand, 26315722 - 26315844
Alignment:
| Q |
176 |
taccatgagagaattgaaaggcatagtgggaaggagttgattgaacaaatcggtgaaacctaattcatcaagaacccaattatcactatcacaatcaatt |
275 |
Q |
| |
|
|||||||||| | || || ||||| ||||||| |||||||||||||||||| |||||||||||||||||| |||||| ||||| || ||||| ||||| |
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|
| T |
26315722 |
taccatgagatagttcaatggcatggtgggaaagagttgattgaacaaatcattgaaacctaattcatcaacaacccagttatcgctgtcacattcaata |
26315821 |
T |
|
| Q |
276 |
atggttttatcgaagtcgaaaac |
298 |
Q |
| |
|
|||||||| || ||||||||||| |
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|
| T |
26315822 |
atggttttgtcaaagtcgaaaac |
26315844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 195 - 311
Target Start/End: Original strand, 43110849 - 43110965
Alignment:
| Q |
195 |
ggcatagtgggaaggagttgattgaacaaatcggtgaaacctaattcatcaagaacccaattatcactatcacaatcaattatggttttatcgaagtcga |
294 |
Q |
| |
|
||||| ||||||| |||| |||||||||||| |||||||| |||||||||| |||||| |||||||| ||||| |||| ||||||||| || ||||| | |
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| T |
43110849 |
ggcatggtgggaacaagttcattgaacaaatcagtgaaacccaattcatcaacaacccagttatcactgtcacattcaactatggttttgtcaaagtcaa |
43110948 |
T |
|
| Q |
295 |
aaactatcacaatatta |
311 |
Q |
| |
|
|||| | ||||||||| |
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|
| T |
43110949 |
aaaccacaacaatatta |
43110965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 274
Target Start/End: Original strand, 43105420 - 43105463
Alignment:
| Q |
231 |
aaacctaattcatcaagaacccaattatcactatcacaatcaat |
274 |
Q |
| |
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||||| || ||||||||||||||||||||||||||||| ||||| |
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|
| T |
43105420 |
aaaccaaactcatcaagaacccaattatcactatcacattcaat |
43105463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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