View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145_high_3 (Length: 242)
Name: NF10145_high_3
Description: NF10145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145_high_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 12368199 - 12367977
Alignment:
| Q |
17 |
cacactaaccattacaagttaaaggtttgaaactccaatatacaactataccaagaaaaattaaattacagatagaaatttnnnnnnnnnnnnnnnnggt |
116 |
Q |
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| T |
12368199 |
cacactaaccattacaagttaaaggtttgaaactccaatatacaactataccaagaaaaattaaattacagatagaaatttaaaaagaaaaaaaaa--gt |
12368102 |
T |
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| Q |
117 |
ctttatattagaatttaattttcttttatcttgacaatgtagacactatagaataagaatgttcattctattgtcttggccttgtattggttaacacccc |
216 |
Q |
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| T |
12368101 |
ccttatattagaatttaattttcttttatgttgacaatgtagacactatagaataacaatgttcattctattgtc-tggccttgtattggttaacacccc |
12368003 |
T |
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| Q |
217 |
catgattaacgcacatcaaccaatac |
242 |
Q |
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|||||||||||||||||||||||||| |
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| T |
12368002 |
catgattaacgcacatcaaccaatac |
12367977 |
T |
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