View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10145_low_3 (Length: 303)
Name: NF10145_low_3
Description: NF10145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145_low_3 |
 | |
|
| [»] chr5 (9 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 13426568 - 13426871
Alignment:
| Q |
1 |
acgacatgaatcaaccatgtatcccactcctactttgtctccaactttaaacttttctactttgcttccaacctctgttacaatacccgcaagttcatgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13426568 |
acgacatgaatcaaccatgtatcccactcctactttgtctccaactttaaacttttctactttgcttccaacctctgttacaatacccgcaagttcatgc |
13426667 |
T |
|
| Q |
101 |
ctgcattttttaaataaattagtataaacaaattgaataattatttactact-gtttcttaagattattttgtacaaattaaaaaatatcttttattaat |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13426668 |
ctgcattttttaaataaattagtataaacaaattgaataattatttactactcatttcttaagattattttgtacaaattaaaaaatatcttttattaat |
13426767 |
T |
|
| Q |
200 |
tatataaaaatttcaaatatactcttgctttttattgactcattcaattttttactctctcgtcattaaagtgagagagttataaatggagaggatctta |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13426768 |
tatataaaaatttcaaatatactcttgctttttattgactcattcaactttttactctctcgtcattaaagtgagagagttataaatggagaggatctta |
13426867 |
T |
|
| Q |
300 |
actc |
303 |
Q |
| |
|
|||| |
|
|
| T |
13426868 |
actc |
13426871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 13419677 - 13419856
Alignment:
| Q |
1 |
acgacatgaatcaaccatgtatcccactcctactttgtctccaactttaaacttttctactttgcttccaacctctgttacaatacccgcaagttcatgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
13419677 |
acgacatgaatcaaccatgtatcccacaccaactttgtctccaactttaaacttttctactttgcttccaacctcggttactatacccgcaagttcatgc |
13419776 |
T |
|
| Q |
101 |
ctgcattttttaaataaattagtataaacaaattgaataattatttactact-gtttcttaagattattttgtacaaattaaa |
182 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
13419777 |
ctgcatttattaaataaat---tataaacaaattgaacaattatttactactcatttcttaacattattttgtacaaattaaa |
13419856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 13447228 - 13447329
Alignment:
| Q |
1 |
acgacatgaatcaaccatgtatcccactcctactttgtctccaactttaaacttttctactttgcttccaacctctgttacaatacccgcaagttcatgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||| | ||||| |||||| ||| |
|
|
| T |
13447228 |
acgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttttactttgcttcccacctctgttactacacccgtaagttcgtgc |
13447327 |
T |
|
| Q |
101 |
ct |
102 |
Q |
| |
|
|| |
|
|
| T |
13447328 |
ct |
13447329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 2 - 108
Target Start/End: Original strand, 13413333 - 13413439
Alignment:
| Q |
2 |
cgacatgaatcaaccatgtatcccactcctactttgtctccaactttaaacttttctactttgcttccaacctctgttacaatacccgcaagttcatgcc |
101 |
Q |
| |
|
||||||||||||| || ||| || || |||||||||||||||||||||||||| || ||||||||||| || |||||||| ||||||||||| ||||||| |
|
|
| T |
13413333 |
cgacatgaatcaatcaagtagccaacacctactttgtctccaactttaaacttctccactttgcttcctacttctgttactatacccgcaagctcatgcc |
13413432 |
T |
|
| Q |
102 |
tgcattt |
108 |
Q |
| |
|
|| |||| |
|
|
| T |
13413433 |
tgtattt |
13413439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 13389069 - 13388949
Alignment:
| Q |
2 |
cgacatgaatcaaccatgtatcccactcctactttgtctccaactttaaacttttctactttgcttccaacctctgttacaatacccgcaagttcatgcc |
101 |
Q |
| |
|
|||||||||||||||||||| || || ||||||||||||||||| || |||||||||||||||||||| |||| ||| || ||||| ||| ||||||| |
|
|
| T |
13389069 |
cgacatgaatcaaccatgtagccaacacctactttgtctccaacattgaacttttctactttgcttcccacctttgtcactataccaacaatctcatgcc |
13388970 |
T |
|
| Q |
102 |
tgcattttttaaataaattag |
122 |
Q |
| |
|
|| |||| ||| ||||||||| |
|
|
| T |
13388969 |
tgtatttattatataaattag |
13388949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 207 - 269
Target Start/End: Original strand, 13419854 - 13419916
Alignment:
| Q |
207 |
aaatttcaaatatactcttgctttttattgactcattcaattttttactctctcgtcattaaa |
269 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
13419854 |
aaatttcaaatatactcttactttttattgactcattcaactttttactctctcatcattaaa |
13419916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 13385248 - 13385128
Alignment:
| Q |
2 |
cgacatgaatcaaccatgtatcccactcctactttgtctccaactttaaacttttctactttgcttccaacctctgttacaatacccgcaagttcatgcc |
101 |
Q |
| |
|
||||||||||||| ||||| || || ||||||||||||||||| || |||||||||||||||||||| |||| ||| || ||||| ||| ||||||| |
|
|
| T |
13385248 |
cgacatgaatcaattatgtagccaacacctactttgtctccaacattgaacttttctactttgcttcccacctttgtcactataccaacaatctcatgcc |
13385149 |
T |
|
| Q |
102 |
tgcattttttaaataaattag |
122 |
Q |
| |
|
|| |||| ||| ||||||||| |
|
|
| T |
13385148 |
tgtatttcttatataaattag |
13385128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 13393477 - 13393376
Alignment:
| Q |
1 |
acgacatgaatcaaccatgtatcccactcctactttgtctccaactttaaacttttctactttgcttccaacctctgttacaatacccgcaagttcatgc |
100 |
Q |
| |
|
|||||| |||||||| | | ||||||| || ||||||||||||| ||| ||||| |||||||||||||| ||||| || || ||||| |||| |||||| |
|
|
| T |
13393477 |
acgacacgaatcaactaagcatcccacacccactttgtctccaattttgaacttctctactttgcttcctacctccgtcactataccagcaatctcatgc |
13393378 |
T |
|
| Q |
101 |
ct |
102 |
Q |
| |
|
|| |
|
|
| T |
13393377 |
ct |
13393376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 13454183 - 13454258
Alignment:
| Q |
3 |
gacatgaatcaaccatgtatcccactcctactttgtctccaactttaaacttttctactttgcttccaacctctgt |
78 |
Q |
| |
|
|||| |||||||||| | ||||||| |||||| ||||||||||||| ||||||| ||||||||||| || ||||| |
|
|
| T |
13454183 |
gacaagaatcaaccaagcatcccacacctactctgtctccaactttgaactttttcactttgcttcccacttctgt |
13454258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 122
Target Start/End: Original strand, 47601530 - 47601620
Alignment:
| Q |
32 |
actttgtctccaactttaaacttttctactttgcttccaacctctgttacaatacccgcaagttcatgcctgcattttttaaataaattag |
122 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| || | ||| || ||||| ||| ||||| ||| |||| ||| ||||||||| |
|
|
| T |
47601530 |
actttgtctccaactttgaacttttctactttgcttcccacttttgtcactataccaacaatctcatgtctgtatttcttatataaattag |
47601620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University