View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145_low_7 (Length: 218)

Name: NF10145_low_7
Description: NF10145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145_low_7
NF10145_low_7
[»] chr5 (2 HSPs)
chr5 (50-205)||(42554176-42554331)
chr5 (53-205)||(28220908-28221060)
[»] chr8 (3 HSPs)
chr8 (57-205)||(43745789-43745934)
chr8 (50-199)||(43430956-43431099)
chr8 (105-184)||(12529881-12529960)
[»] chr1 (3 HSPs)
chr1 (53-196)||(4677538-4677681)
chr1 (61-197)||(34465245-34465381)
chr1 (101-205)||(15596068-15596172)
[»] chr7 (20 HSPs)
chr7 (52-196)||(8630188-8630332)
chr7 (95-196)||(3148374-3148475)
chr7 (73-205)||(6790391-6790523)
chr7 (102-205)||(8647711-8647814)
chr7 (105-205)||(7876823-7876923)
chr7 (96-196)||(8584534-8584634)
chr7 (53-199)||(8655310-8655456)
chr7 (95-197)||(17261395-17261497)
chr7 (105-190)||(8591411-8591496)
chr7 (105-190)||(8602747-8602832)
chr7 (60-196)||(10492999-10493135)
chr7 (60-196)||(13332148-13332284)
chr7 (53-196)||(8668426-8668569)
chr7 (95-197)||(17269103-17269205)
chr7 (105-181)||(8582676-8582752)
chr7 (56-196)||(27829343-27829483)
chr7 (96-171)||(1302315-1302390)
chr7 (96-171)||(8660248-8660323)
chr7 (105-184)||(8546688-8546767)
chr7 (96-178)||(8104069-8104151)
[»] chr2 (9 HSPs)
chr2 (53-201)||(16661059-16661207)
chr2 (61-191)||(12257917-12258047)
chr2 (95-166)||(16656628-16656699)
chr2 (61-195)||(12235767-12235901)
chr2 (54-196)||(43626282-43626424)
chr2 (102-195)||(12000343-12000436)
chr2 (102-193)||(12244404-12244495)
chr2 (61-195)||(7543246-7543380)
chr2 (61-195)||(14705432-14705566)
[»] chr4 (5 HSPs)
chr4 (53-196)||(9323062-9323205)
chr4 (53-196)||(9377541-9377684)
chr4 (53-201)||(30776078-30776226)
chr4 (53-196)||(9335034-9335176)
chr4 (95-184)||(35133457-35133546)
[»] chr6 (1 HSPs)
chr6 (53-126)||(28911275-28911348)


Alignment Details
Target: chr5 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 50 - 205
Target Start/End: Complemental strand, 42554331 - 42554176
Alignment:
Q  50 gattagaaatgtaccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaa 149  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42554331 gattagaaatgtaccaaagacagtgttttgggggttggtggcggtttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaa 42554232  T
Q  150 gaaggtgttgttttgttgccttcatcattgtgaataatctcaactctattttgttc 205  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42554231 gaaggtgttgttttgttgccttgatcattgtgaataatctcaactctattttgttc 42554176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 53 - 205
Target Start/End: Original strand, 28220908 - 28221060
Alignment:
Q  53 tagaaatgtaccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaa 152  Q
    ||||||| ||||||||||  | |||||||||||| ||||  ||||||  ||||||||||| |||||||||||||||| ||  || |||||||||||||||    
T  28220908 tagaaatttaccaaagacggtattttgggggttgttggccgtttgatttttagcagcatcgccaatcaacctttcatcatcggtgaaagcaacaaaagaa 28221007  T
Q  153 ggtgttgttttgttgccttcatcattgtgaataatctcaactctattttgttc 205  Q
    || |||||||||||||||| ||||||||||||||||||||| ||||| |||||    
T  28221008 ggagttgttttgttgccttgatcattgtgaataatctcaaccctattgtgttc 28221060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 57 - 205
Target Start/End: Original strand, 43745789 - 43745934
Alignment:
Q  57 aatgtaccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtg 156  Q
    |||||||||||||   ||||||| |||||||||||| |||||| ||||||||| ||||| |||||||||||||||| |||||||||||||||||||   |    
T  43745789 aatgtaccaaagatggtgttttgagggttggtggcggtttgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaa---g 43745885  T
Q  157 ttgttttgttgccttcatcattgtgaataatctcaactctattttgttc 205  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  43745886 ttgttttgttgccttgatcattgtgaataatctcaactctattttgttc 43745934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 50 - 199
Target Start/End: Original strand, 43430956 - 43431099
Alignment:
Q  50 gattagaaatgtaccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaa 149  Q
    ||||| |||||||||||||||  ||||||| |||||||||||| |||||| | | ||||||| ||| ||      ||||| ||  |||||||||||||||    
T  43430956 gattaaaaatgtaccaaagacggtgttttgagggttggtggcggtttgattcatggcagcattaccgat------ttcatcatcggtaaaagcaacaaaa 43431049  T
Q  150 gaaggtgttgttttgttgccttcatcattgtgaataatctcaactctatt 199  Q
     |  |||||||||| ||||||| ||||||||||| ||||| |||||||||    
T  43431050 aagagtgttgttttattgccttgatcattgtgaaaaatctgaactctatt 43431099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 105 - 184
Target Start/End: Original strand, 12529881 - 12529960
Alignment:
Q  105 gcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttcatcattgtgaat 184  Q
    ||||||| ||||||||| || | |  || ||||||||||||| ||||||||||||||||||| |||| ||||||||||||    
T  12529881 gcagcatgaccaatcaatctctgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaat 12529960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 53 - 196
Target Start/End: Complemental strand, 4677681 - 4677538
Alignment:
Q  53 tagaaatgtaccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaa 152  Q
    ||||||| ||||||||||| ||||||  | |||||||||   ||||| ||||||||||| |||||||||||||| || || |||||||||||||||||||    
T  4677681 tagaaatttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcatcagtaaaagcaacaaaagaa 4677582  T
Q  153 ggtgttgttttgttgccttcatcattgtgaataatctcaactct 196  Q
    |||||||||||||||||||  ||||||| ||||||||| |||||    
T  4677581 ggtgttgttttgttgccttgttcattgtaaataatctccactct 4677538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 61 - 197
Target Start/End: Complemental strand, 34465381 - 34465245
Alignment:
Q  61 taccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgt 160  Q
    ||||||| ||| |||| || |||||||| ||  |||||| ||||||||||| ||| ||||| |||| || ||||||||||||||||||||||||||| ||    
T  34465381 taccaaaaacagtgttctgtgggttggtagcagtttgattcttagcagcattaccgatcaatctttgatcatgagtaaaagcaacaaaagaaggtgtggt 34465282  T
Q  161 tttgttgccttcatcattgtgaataatctcaactcta 197  Q
    | |||| ||||  ||||||| ||||||||| ||||||    
T  34465281 tgtgttaccttggtcattgtcaataatctctactcta 34465245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 101 - 205
Target Start/End: Original strand, 15596068 - 15596172
Alignment:
Q  101 cttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttcatcattgtgaataatctcaactctattt 200  Q
    |||||||||||||||||||||||||| || || ||| |||| |||||||||||||||  || |||| ||||  |||||||| |||||||| ||||||||     
T  15596068 cttagcagcatcaccaatcaacctttgatcattagtgaaagaaacaaaagaaggtgtaattctgtttccttggtcattgtggataatctcgactctattc 15596167  T
Q  201 tgttc 205  Q
    |||||    
T  15596168 tgttc 15596172  T

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Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 52 - 196
Target Start/End: Original strand, 8630188 - 8630332
Alignment:
Q  52 ttagaaatgtaccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaaga 151  Q
    |||||||| ||||||||||| ||||||| |||||| ||||    ||||||||||||||| |||||| |||||||| || ||  ||||||||||| || ||    
T  8630188 ttagaaatataccaaagacagtgttttgtgggttgatggcagcctgatccttagcagcaccaccaaccaacctttgatcatcggtaaaagcaacgaagga 8630287  T
Q  152 aggtgttgttttgttgccttcatcattgtgaataatctcaactct 196  Q
    ||||||  |||| ||||||||||||||||||||||||||||||||    
T  8630288 aggtgtgattttattgccttcatcattgtgaataatctcaactct 8630332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 95 - 196
Target Start/End: Original strand, 3148374 - 3148475
Alignment:
Q  95 ttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttcatcattgtgaataatctcaact 194  Q
    ||||| ||||||||||||||||| |||||||| || || ||| |||||||||||||||||||| |||||||||||||  |||||||||||||||||||||    
T  3148374 ttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtgaataatctcaact 3148473  T
Q  195 ct 196  Q
    ||    
T  3148474 ct 3148475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 73 - 205
Target Start/End: Original strand, 6790391 - 6790523
Alignment:
Q  73 tgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttc 172  Q
    ||||||| |||||||||||   ||||| ||||||||||||||| ||||||||||  | ||  || |||||||||||||||||||| |||||||| ||||     
T  6790391 tgttttgcgggttggtggcagcttgatacttagcagcatcaccgatcaacctttggtcatcggtgaaagcaacaaaagaaggtgtggttttgttaccttg 6790490  T
Q  173 atcattgtgaataatctcaactctattttgttc 205  Q
     |||||||||||||||||||||||||| |||||    
T  6790491 gtcattgtgaataatctcaactctattgtgttc 6790523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 102 - 205
Target Start/End: Original strand, 8647711 - 8647814
Alignment:
Q  102 ttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttcatcattgtgaataatctcaactctatttt 201  Q
    ||||| ||||||||||||||||||| || ||  || |||||||||||||||||||| ||| |||| |||| ||||||||||||||||||||||||||| |    
T  8647711 ttagcggcatcaccaatcaacctttgatcatcggtgaaagcaacaaaagaaggtgtagttctgtttccttgatcattgtgaataatctcaactctattgt 8647810  T
Q  202 gttc 205  Q
    ||||    
T  8647811 gttc 8647814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 105 - 205
Target Start/End: Complemental strand, 7876923 - 7876823
Alignment:
Q  105 gcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttcatcattgtgaataatctcaactctattttgtt 204  Q
    |||||||||||||||||||||| || ||  || |||||||||||||||||||||||| |||||||||  |||||||||||||| || |||||||| ||||    
T  7876923 gcagcatcaccaatcaacctttgatcattcgtgaaagcaacaaaagaaggtgttgttctgttgccttgttcattgtgaataatttcgactctattgtgtt 7876824  T
Q  205 c 205  Q
    |    
T  7876823 c 7876823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 96 - 196
Target Start/End: Complemental strand, 8584634 - 8584534
Alignment:
Q  96 tgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttcatcattgtgaataatctcaactc 195  Q
    ||||||||||||||| |||||| |||||||| || ||  |||||||||||||| ||||||||  |||| ||||||||||| |||||||||||||||||||    
T  8584634 tgatccttagcagcaccaccaaccaacctttgatcatcggtaaaagcaacaaaggaaggtgtgattttattgccttcatcgttgtgaataatctcaactc 8584535  T
Q  196 t 196  Q
    |    
T  8584534 t 8584534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 53 - 199
Target Start/End: Original strand, 8655310 - 8655456
Alignment:
Q  53 tagaaatgtaccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaa 152  Q
    ||||||| ||||||| ||| |||||| ||||||||| ||   ||||| || |||  |||  ||||||||||||| || || ||| |||||||||| ||||    
T  8655310 tagaaatttaccaaatacagtgttttcggggttggtagcagattgattctcagctccattgccaatcaacctttgataatcagtgaaagcaacaacagaa 8655409  T
Q  153 ggtgttgttttgttgccttcatcattgtgaataatctcaactctatt 199  Q
    ||||| ||| | ||||||| |||||||||||||||||||||||||||    
T  8655410 ggtgtagttctattgccttgatcattgtgaataatctcaactctatt 8655456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 95 - 197
Target Start/End: Original strand, 17261395 - 17261497
Alignment:
Q  95 ttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttcatcattgtgaataatctcaact 194  Q
    ||||| |||||| |||||||| |||||||||||||  | || |||||||||||||||||| ||  ||||||| |||| |||||||||||| |||||||||    
T  17261395 ttgattcttagcggcatcaccgatcaacctttcatctttagcaaaagcaacaaaagaaggagtaattttgtttccttgatcattgtgaatgatctcaact 17261494  T
Q  195 cta 197  Q
    |||    
T  17261495 cta 17261497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 105 - 190
Target Start/End: Original strand, 8591411 - 8591496
Alignment:
Q  105 gcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttcatcattgtgaataatctc 190  Q
    |||||||||||||||||||||| || || ||||||||||||||||||||||||  || | || |||| ||||||||||||||||||    
T  8591411 gcagcatcaccaatcaacctttgatcattagtaaaagcaacaaaagaaggtgtaattctatttccttgatcattgtgaataatctc 8591496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 105 - 190
Target Start/End: Original strand, 8602747 - 8602832
Alignment:
Q  105 gcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttcatcattgtgaataatctc 190  Q
    ||||||||||| |||||||||| || || ||||||||||||||||||||| || ||| |||| |||| ||||||||||||||||||    
T  8602747 gcagcatcaccgatcaaccttttatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatctc 8602832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 60 - 196
Target Start/End: Complemental strand, 10493135 - 10492999
Alignment:
Q  60 gtaccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttg 159  Q
    |||||||||||  ||||||  ||||| |||||   ||||| ||||||||||||||| |||||||||| || ||   | |||||||||||||||||||| |    
T  10493135 gtaccaaagacggtgttttcagggttagtggcagattgattcttagcagcatcaccgatcaacctttgatcattgttgaaagcaacaaaagaaggtgtag 10493036  T
Q  160 ttttgttgccttcatcattgtgaataatctcaactct 196  Q
    || | || |||| ||||||||||||||| ||||||||    
T  10493035 ttctatttccttgatcattgtgaataatttcaactct 10492999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 60 - 196
Target Start/End: Complemental strand, 13332284 - 13332148
Alignment:
Q  60 gtaccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttg 159  Q
    |||||||||| | ||||||  ||||| |||||   ||||| ||| ||||||||||||||||| |||| || ||   | |||||||||||||||||||| |    
T  13332284 gtaccaaagatagtgttttcagggttagtggcagattgattcttggcagcatcaccaatcaatctttgatcattgttgaaagcaacaaaagaaggtgtag 13332185  T
Q  160 ttttgttgccttcatcattgtgaataatctcaactct 196  Q
    || | || |||| ||||||||||||||||||||||||    
T  13332184 ttctatttccttgatcattgtgaataatctcaactct 13332148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 53 - 196
Target Start/End: Original strand, 8668426 - 8668569
Alignment:
Q  53 tagaaatgtaccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaa 152  Q
    ||||||| ||||||||| | ||||||  ||||| || ||   ||||| |||||||||||| |||||||||||||  | ||   | |||||||||||||||    
T  8668426 tagaaatttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcgccaatcaacctttgttcattgttgaaagcaacaaaagaa 8668525  T
Q  153 ggtgttgttttgttgccttcatcattgtgaataatctcaactct 196  Q
    |||||| ||  ||| |||| ||||||||||||||||||||||||    
T  8668526 ggtgttattcggtttccttgatcattgtgaataatctcaactct 8668569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 95 - 197
Target Start/End: Original strand, 17269103 - 17269205
Alignment:
Q  95 ttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttcatcattgtgaataatctcaact 194  Q
    ||||| |||||| | |||||| || ||||||||||  | || ||||||||||||||| || || ||||||||||||| ||||||||| ||||||||||||    
T  17269103 ttgattcttagcggaatcaccgataaacctttcatctttagcaaaagcaacaaaagacggagtagttttgttgccttgatcattgtgtataatctcaact 17269202  T
Q  195 cta 197  Q
    |||    
T  17269203 cta 17269205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 105 - 181
Target Start/End: Original strand, 8582676 - 8582752
Alignment:
Q  105 gcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttcatcattgtg 181  Q
    ||||||||||||||||| |||| |  || ||||||||||||| ||||||||||||||||||| |||| |||||||||    
T  8582676 gcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtg 8582752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 56 - 196
Target Start/End: Complemental strand, 27829483 - 27829343
Alignment:
Q  56 aaatgtaccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggt 155  Q
    |||| ||||||||| | ||||||| |||||||  ||   ||| | |||||||||||||||||||||||| |  |  |  || ||||||||| ||||||||    
T  27829483 aaatataccaaagatagtgttttgagggttggaagcagcttggttcttagcagcatcaccaatcaacctctgtttgtccgtgaaagcaacacaagaaggt 27829384  T
Q  156 gttgttttgttgccttcatcattgtgaataatctcaactct 196  Q
    ||||| ||||||||||  ||||||||||||||||| |||||    
T  27829383 gttgtcttgttgccttgttcattgtgaataatctccactct 27829343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 96 - 171
Target Start/End: Original strand, 1302315 - 1302390
Alignment:
Q  96 tgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgcctt 171  Q
    |||| ||||||||||||||| |||||||||| || ||  || |||||||||||||| |||||||||||||||||||    
T  1302315 tgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgcctt 1302390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 96 - 171
Target Start/End: Original strand, 8660248 - 8660323
Alignment:
Q  96 tgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgcctt 171  Q
    |||| |||||||||||||||||||||||||| ||  | ||| ||||||||||| ||||||||||||||||| ||||    
T  8660248 tgattcttagcagcatcaccaatcaacctttgatcgtcagtgaaagcaacaaatgaaggtgttgttttgtttcctt 8660323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 184
Target Start/End: Original strand, 8546688 - 8546767
Alignment:
Q  105 gcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttcatcattgtgaat 184  Q
    |||||||||||||||| |||||    ||  || ||||||||| ||||||||||||||||||| |||| ||||||||||||    
T  8546688 gcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaat 8546767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 178
Target Start/End: Original strand, 8104069 - 8104151
Alignment:
Q  96 tgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttcatcatt 178  Q
    |||| ||||||||||||||| ||||||||||||  || ||| ||||||||| |||| ||||| ||| |||| |||| ||||||    
T  8104069 tgattcttagcagcatcaccgatcaacctttcactatcagtgaaagcaacataagacggtgtcgttctgttcccttgatcatt 8104151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 53 - 201
Target Start/End: Complemental strand, 16661207 - 16661059
Alignment:
Q  53 tagaaatgtaccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaa 152  Q
    ||||||| || |||||||  ||||||| |||||| | ||   |||||||||||||||| |||| | |||||||| |  || |||||||||||||||||||    
T  16661207 tagaaatatagcaaagacggtgttttgtgggttgatagcagcttgatccttagcagcaccaccgaccaacctttgagcatcagtaaaagcaacaaaagaa 16661108  T
Q  153 ggtgttgttttgttgccttcatcattgtgaataatctcaactctatttt 201  Q
    |||||  |||||||||||||||| ||||| |||||||||||||| ||||    
T  16661107 ggtgtaattttgttgccttcatcgttgtggataatctcaactctgtttt 16661059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 61 - 191
Target Start/End: Complemental strand, 12258047 - 12257917
Alignment:
Q  61 taccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgt 160  Q
    ||||||||||| ||| ||| |||||||  ||   ||||| |||||||||||||||||||||||||| ||  | ||||||||||||| ||||||| |||||    
T  12258047 taccaaagacagtgtgttgagggttggcagcagcttgattcttagcagcatcaccaatcaacctttgatctttagtaaaagcaacacaagaaggcgttgt 12257948  T
Q  161 tttgttgccttcatcattgtgaataatctca 191  Q
    | |||| |||| ||| |||||||| ||||||    
T  12257947 tctgtttccttgatcgttgtgaatgatctca 12257917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 95 - 166
Target Start/End: Complemental strand, 16656699 - 16656628
Alignment:
Q  95 ttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgtt 166  Q
    ||||| ||||||||||||||| |||||||||| || |||||| |||||||||||||||||||||||| ||||    
T  16656699 ttgattcttagcagcatcaccgatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtt 16656628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 61 - 195
Target Start/End: Original strand, 12235767 - 12235901
Alignment:
Q  61 taccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgt 160  Q
    ||||||||||  ||||||| |||||||  ||   ||||| |||||||||||||||||||||||| | ||  |  || ||||||||||||||||| |||||    
T  12235767 taccaaagacggtgttttgcgggttggaagcagcttgattcttagcagcatcaccaatcaacctctgattttcggtgaaagcaacaaaagaaggggttgt 12235866  T
Q  161 tttgttgccttcatcattgtgaataatctcaactc 195  Q
    | | ||||||| ||| |||||||| ||||||||||    
T  12235867 tctattgccttgatcgttgtgaatgatctcaactc 12235901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 54 - 196
Target Start/End: Original strand, 43626282 - 43626424
Alignment:
Q  54 agaaatgtaccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaag 153  Q
    |||||| ||||||||||| |||||| ||||| || ||    |||| |||||||||||||||||||||||||||  |  | ||| |||| |||||||||||    
T  43626282 agaaatttaccaaagacagtgttttcggggtcggaggtagcttgacccttagcagcatcaccaatcaacctttggtccttagtgaaagaaacaaaagaag 43626381  T
Q  154 gtgttgttttgttgccttcatcattgtgaataatctcaactct 196  Q
    |||| ||| |||| ||||  |||||||| |||||||| |||||    
T  43626382 gtgtagttctgtttccttggtcattgtggataatctctactct 43626424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 102 - 195
Target Start/End: Original strand, 12000343 - 12000436
Alignment:
Q  102 ttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttcatcattgtgaataatctcaactc 195  Q
    ||||||||||||||||  ||||||| ||  | ||| ||||||||| ||||||||||| |||||||||||| ||| |||||||| || |||||||    
T  12000343 ttagcagcatcaccaacaaacctttgattttcagtgaaagcaacacaagaaggtgttattttgttgccttgatcgttgtgaatgatttcaactc 12000436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 102 - 193
Target Start/End: Complemental strand, 12244495 - 12244404
Alignment:
Q  102 ttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttcatcattgtgaataatctcaac 193  Q
    ||||||||||||||||| ||||||| ||  | ||| ||||||||| |||||||||||||| ||||||| | ||| |||||||| || |||||    
T  12244495 ttagcagcatcaccaataaacctttgatcttcagtgaaagcaacacaagaaggtgttgttctgttgccctgatcgttgtgaatgatttcaac 12244404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 195
Target Start/End: Original strand, 7543246 - 7543380
Alignment:
Q  61 taccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgt 160  Q
    ||||||||||| ||||||| |||||||  ||   ||||| |||||||  |||||| |||||||| | ||  |  || |||||||||||||||||||||||    
T  7543246 taccaaagacagtgttttgagggttggaagcagcttgattcttagcattatcaccgatcaacctctgattttcggtgaaagcaacaaaagaaggtgttgt 7543345  T
Q  161 tttgttgccttcatcattgtgaataatctcaactc 195  Q
    | |||||||||  || |||||||| || |||||||    
T  7543346 tctgttgccttggtcgttgtgaatgatttcaactc 7543380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 195
Target Start/End: Original strand, 14705432 - 14705566
Alignment:
Q  61 taccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgt 160  Q
    ||||||||||| ||||| | |||||||  ||   ||||| |||||||||||||||||||||||  | ||  |  || ||||||||||||||||| |||||    
T  14705432 taccaaagacagtgtttcgagggttggcagcagcttgattcttagcagcatcaccaatcaaccgctgattttcggtgaaagcaacaaaagaaggagttgt 14705531  T
Q  161 tttgttgccttcatcattgtgaataatctcaactc 195  Q
    | | ||||||| ||| |||||||| || |||||||    
T  14705532 tctattgccttgatcgttgtgaatgatttcaactc 14705566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 53 - 196
Target Start/End: Complemental strand, 9323205 - 9323062
Alignment:
Q  53 tagaaatgtaccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaa 152  Q
    ||||||| ||||||||| | ||||||  ||||| || ||   ||||| ||||||||||||||||||||||||||  | ||   | |||||||||||||||    
T  9323205 tagaaatttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcaccaatcaacctttgctcattgttgaaagcaacaaaagaa 9323106  T
Q  153 ggtgttgttttgttgccttcatcattgtgaataatctcaactct 196  Q
    |||||||||  ||| |||| ||||||||||||||||||||||||    
T  9323105 ggtgttgttcggtttccttgatcattgtgaataatctcaactct 9323062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 53 - 196
Target Start/End: Complemental strand, 9377684 - 9377541
Alignment:
Q  53 tagaaatgtaccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaa 152  Q
    ||||||| ||||||||| | ||||||  ||||| || ||   ||||| ||||||||||||||||||||||||||  | ||   | |||||||||||||||    
T  9377684 tagaaatttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcaccaatcaacctttgctcattgttgaaagcaacaaaagaa 9377585  T
Q  153 ggtgttgttttgttgccttcatcattgtgaataatctcaactct 196  Q
    |||||||||  ||| |||| ||||||||||||||||||||||||    
T  9377584 ggtgttgttcggtttccttgatcattgtgaataatctcaactct 9377541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 53 - 201
Target Start/End: Original strand, 30776078 - 30776226
Alignment:
Q  53 tagaaatgtaccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaa 152  Q
    ||||||| ||||||||||| ||||||| |||||| | ||    || |||||||||||| |||| | |||||||| |  || ||| |||||||||||||||    
T  30776078 tagaaatttaccaaagacagtgttttgagggttgatagcagcctggtccttagcagcagcaccgaccaacctttgaccatcagtgaaagcaacaaaagaa 30776177  T
Q  153 ggtgttgttttgttgccttcatcattgtgaataatctcaactctatttt 201  Q
    |||||  ||||| |||||||||| ||||| ||||| |||||||| ||||    
T  30776178 ggtgtgattttgctgccttcatcgttgtggataatttcaactctgtttt 30776226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 53 - 196
Target Start/End: Complemental strand, 9335176 - 9335034
Alignment:
Q  53 tagaaatgtaccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaa 152  Q
    ||||||| ||||||||| | ||||||  ||||| || ||   ||||| |||||||||||||||| |||||||||  | ||   | |||||||||||||||    
T  9335176 tagaaatttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcacca-tcaacctttgctcattgttgaaagcaacaaaagaa 9335078  T
Q  153 ggtgttgttttgttgccttcatcattgtgaataatctcaactct 196  Q
    |||||||||  ||| |||| ||||||||||||||||||||||||    
T  9335077 ggtgttgttcggtttccttgatcattgtgaataatctcaactct 9335034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 95 - 184
Target Start/End: Original strand, 35133457 - 35133546
Alignment:
Q  95 ttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttcatcattgtgaat 184  Q
    ||||| ||||||||||||||| |||||||||| ||  | ||| ||||||| | ||||||||||||||||||||| || ||| ||||||||    
T  35133457 ttgattcttagcagcatcaccgatcaacctttgatccttagtgaaagcaatacaagaaggtgttgttttgttgctttgatcgttgtgaat 35133546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 28911275 - 28911348
Alignment:
Q  53 tagaaatgtaccaaagacactgttttgggggttggtggcgctttgatccttagcagcatcaccaatcaaccttt 126  Q
    ||||||| |||| || ||| |||||| ||||||||||||    |||| ||||||||||||||||||||||||||    
T  28911275 tagaaatatacctaaaacagtgttttcggggttggtggcagcctgattcttagcagcatcaccaatcaaccttt 28911348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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