View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10146_high_12 (Length: 279)
Name: NF10146_high_12
Description: NF10146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10146_high_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 13879455 - 13879675
Alignment:
| Q |
19 |
attttggctttagtgttaacaaagtcgcagtgcttccctttcaagttaagtgttactgaaaacagatttcgaccgggaagaacatcctcaatcctgagag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13879455 |
attttggctttagtgttaacaaagtcgcagtgcttccctttcaagttaagtgttactgaaaacagatttcgaccgggaagaacatcctcaatcctgagag |
13879554 |
T |
|
| Q |
119 |
taccgtgatcaacacagacatcaatctcttccttcctcacgttgtcagcgacaagattcgaccgcaaaatcacagactcctcagtctccgtaaaatccca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13879555 |
taccgtgatcaacacagacatcaatctcttccttcctcacgttgtcagcgacaagattcgaccgcaaaatcacagactcctcagtctccgtaaaatccca |
13879654 |
T |
|
| Q |
219 |
gagaacaagatcatcatcatc |
239 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
13879655 |
gagaacaagatcatcatcatc |
13879675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 13875238 - 13875448
Alignment:
| Q |
19 |
attttggctttagtgttaacaaagtcgcagtgcttccctttcaagttaagtgttactgaaaacagatttcgaccgggaagaacatcctcaatcctgagag |
118 |
Q |
| |
|
|||||||||||||||||||||| |||| | |||||||||||||||| ||||| ||||||| |||||||||| |||||| |||||| ||||||||||| |
|
|
| T |
13875238 |
attttggctttagtgttaacaacgtcgaaatgcttccctttcaagtcgagtgtacctgaaaatcgatttcgacctggaagagcatccttaatcctgagag |
13875337 |
T |
|
| Q |
119 |
taccgtgatcaacacagacatcaatctcttccttcctcacgttgtcagcgacaagattcgaccgcaaaatcacagactcctcagtctccgtaaaatccca |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||| ||||||| ||||||||| |||||| |||||| || |
|
|
| T |
13875338 |
taccgtgatcaacacagacatcaatctcttccttcctcacgttgttggcgaccagattcaaccgaaaaatcaaagactcctcggtctcctcaaaatcaca |
13875437 |
T |
|
| Q |
219 |
gagaacaagat |
229 |
Q |
| |
|
||||||||||| |
|
|
| T |
13875438 |
gagaacaagat |
13875448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University