View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10146_high_3 (Length: 510)
Name: NF10146_high_3
Description: NF10146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10146_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 19 - 501
Target Start/End: Complemental strand, 34650350 - 34649868
Alignment:
| Q |
19 |
gacagtaccttcaacggttccaacagcagatctcaaaggtcctgagttttgttttgcatagtcatacagactcgacatgcaaacaaaagcatgaatagca |
118 |
Q |
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| T |
34650350 |
gacagtaccttcaacggttccaacagcagatctcaaaggtcctgagttttgttttgcatagtcatacagactcgacatgcaaacaaaagcatgaatagca |
34650251 |
T |
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| Q |
119 |
gcaattctcacaaacccaagatgcttcagtttttcatgatcatttctctctacatccatctgcacaaattcaatgtataataaattattagatgagatct |
218 |
Q |
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| T |
34650250 |
gcaattctcacaaacccaagatgcttcagtttttcatgatcatttctctctacatccatctgcacaaattcaatgtataataaattattagatgagatct |
34650151 |
T |
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| Q |
219 |
atattattattatagtaatatacgtgcattcatcat---gcaatgtaaattaacctgtttggtggtggtcattgcttcctttgtttgtgttggagcttat |
315 |
Q |
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| T |
34650150 |
atattattat---agtaatatacgtgcattcatcatcatgcaatgtaaattaacctgtttggtggtggtcattgtttcctttgtttgtgttggagcttat |
34650054 |
T |
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| Q |
316 |
gtttttctcgtcagttgttactggttataaggaggaagacacggttggaatgtgagtgagatatggaggtgaaaattgaaatcaaaacaaaaaagcattg |
415 |
Q |
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| T |
34650053 |
gtttttctcgtcagttgttactggttataaggaggaagacacggttggaatgtgagtgatatatggaggtggaaattgaaatcaaaacaaaaaagcattg |
34649954 |
T |
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| Q |
416 |
aaataggggccaatgtattaatcttgaaatactaaaatgtaacgtatgtgtctttaaattgtacttattgacgttgattcctatgc |
501 |
Q |
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| T |
34649953 |
aaataggggccaatgtattaatcttgaaatactaaaatgtaacgtatgtgtctttaaattgtacttattgacgttgattcctatgc |
34649868 |
T |
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