View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10146_high_8 (Length: 348)
Name: NF10146_high_8
Description: NF10146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10146_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 101 - 339
Target Start/End: Complemental strand, 27413629 - 27413391
Alignment:
| Q |
101 |
caagggcaaagtgcagcgccgttcttctagcaatcctacgcatgacagtcatttccttgttggataaacaaggtttcaccccatacagaagaagtctgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27413629 |
caagggcaaagtgcagcgccgttcttctagcaatcctacgcatgacagtcatttccttgttggataaacaaggtttcaccccatacggaagaagtctgaa |
27413530 |
T |
|
| Q |
201 |
tggtgttttataccctggaaccacaacgggtaattgatcagcatcaacagttaaaggctcacggcctgtccgatctttgaagcgcggacccaactcatct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
27413529 |
tggtgttttataccctggaaccacaacgggtaattgatcagcatcaacagttaaaggctcacggcctgtccaatctttgaagcgcggacccaactcatct |
27413430 |
T |
|
| Q |
301 |
aacaaaaggttgagtttgatcgattccattgattcttct |
339 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
27413429 |
aacaaaaggttgagtttgatcgattccattgattcttct |
27413391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 27414497 - 27414419
Alignment:
| Q |
19 |
agtctcagcaaggattctagcaagtaacgacatttgagatgatttgttatttgataaagtaatcgatgaagcattttga |
97 |
Q |
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||||||||||||| ||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
27414497 |
agtctcagcaagggttccagcaagtaactgcatttgagatgatttgctatttgataaagtaatcgatgaagcattttga |
27414419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 101 - 339
Target Start/End: Original strand, 52427997 - 52428235
Alignment:
| Q |
101 |
caagggcaaagtgcagcgccgttcttctagcaatcctacgcatgacagtcatttccttgttggataaacaaggtttcaccccatacagaagaagtctgaa |
200 |
Q |
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||||||||||||| | ||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
52427997 |
caagggcaaagtgtggtgccgttcttctagaaaccctacgcatgtcagtcatttccttgttggataaacaaggtttcaccccatacggaagaagtctgaa |
52428096 |
T |
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| Q |
201 |
tggtgttttataccctggaaccacaacgggtaattgatcagcatcaacagttaaaggctcacggcctgtccgatctttgaagcgcggacccaactcatct |
300 |
Q |
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||||||||||||||||||||||||| | |||||||| ||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
52428097 |
tggtgttttataccctggaaccacagcaggtaattggtcagcatcaacaggtaaaggctcacggcctgtccaatcattgaagcgcggacccaactcatct |
52428196 |
T |
|
| Q |
301 |
aacaaaaggttgagtttgatcgattccattgattcttct |
339 |
Q |
| |
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|||||||||||||||| |||| ||||||| ||||||||| |
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| T |
52428197 |
aacaaaaggttgagttcgatcaattccatcgattcttct |
52428235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 52425728 - 52425806
Alignment:
| Q |
19 |
agtctcagcaaggattctagcaagtaacgacatttgagatgatttgttatttgataaagtaatcgatgaagcattttga |
97 |
Q |
| |
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||||||||||||| ||| |||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
52425728 |
agtctcagcaagggttccagcaagtaactgcatttgagatgattttctatttgataaagtaatcaatgaagcattttga |
52425806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 273 - 329
Target Start/End: Original strand, 44060522 - 44060578
Alignment:
| Q |
273 |
atctttgaagcgcggacccaactcatctaacaaaaggttgagtttgatcgattccat |
329 |
Q |
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| T |
44060522 |
atctttgaagcgcggacccaattcatctaataaaaggttgagttcaatcaattccat |
44060578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 225
Target Start/End: Original strand, 44060391 - 44060495
Alignment:
| Q |
119 |
ccgttcttctagcaatcctacgcatgacagtcatttccttgttggataaacaaggtttcaccccatacagaagaagtctgaatggtgttttataccctgg |
218 |
Q |
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||||||||||| |||| ||||||| ||||||||||| || |||||||||||| |||||| |||| |||||||| |||||| ||||| |||| ||| |
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| T |
44060391 |
ccgttcttctaacaattctacgcacgacagtcattt--tttctggataaacaagaattcacctcatatggaagaagtttgaatgaagttttgtaccttgg |
44060488 |
T |
|
| Q |
219 |
aaccaca |
225 |
Q |
| |
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||||||| |
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| T |
44060489 |
aaccaca |
44060495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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